Table 1.
Sample set sizes and data dependency structure
| Chip platform | HG-U133_Plus_2.0 | HG-U133_AB | Intersection | ||||
| Controls | Parkinson's | Controls | Parkinson's | Controls | Parkinson's | ||
| Brain tissue | Shortcut | ||||||
| Brodmann area 35 | BA35 | 11 | 12 | 13 | 12 | 10 | 11 |
| Caudate nucleusP | CauNuc | 23 | 12 | 18 | 13 | 16 | 12 |
| Nucleus ambiguus | NucAmb | 12 | 12 | 13 | 12 | 11 | 11 |
| Nucleus basalis of Meynert | NucBas | 8 | 11 | 14 | 12 | 8 | 11 |
| Pulvinar | Pulvinar | 13 | 11 | 7 | 12 | 6 | 11 |
| PutamenP | Putamen | 17 | 11 | 13 | 13 | 10 | 11 |
| Reticular formation of midbrain | RetForm | 13 | 9 | 10 | 13 | 10 | 9 |
| Septal area of paraterminal body of rhinencephalon | SepArea | 25 | 12 | 12 | 12 | 10 | 12 |
| Substantia nigraP | SubNig | 11 | 13 | 10 | 12 | 7 | 12 |
| Subthalamic nucleusP | SubthNuc | 12 | 7 | 10 | 12 | 7 | 7 |
Summary of sample sizes per chip platform and brain tissue and data dependency structure with respect to donor subjects are presented. Intersection column shows number of samples sharing the same donor material. Brain tissue involved into Parkinson's disease marked by subscript P.