Table 1.
Exon | Primer Sequence | MgCl2 (mM) | Annealing Temperature (°C) | Amplicon (bp) |
1A | F: TCCCAGCCTGTTGCTTATTC | 1.5 | 55 | 326 |
R: AGGCCTGGTGGACAGAGAG | ||||
1B | F: AAGCAAGGAGCCTTCCTGTC | 1.5 | 55 | 260 |
R: GTACACCTGCCCGTTGTTCT | ||||
1C* | F: GCAGGTGTACAGCTTGCTCA | 1.5 | 55 | 464 |
R: ACACGAAACCCTGGTCGTAG | ||||
1D | F: CTCCTACCCGCAGCAGTTC | 1.5 | 55 | 227 |
R: GGTACTCGGGCAGCTCTTC | ||||
1E | F: CGACCAGGGTTTCGTGTACT | 1.5 | 55 | 280 |
R: AGGGTAGGCCTGCTCGAAG | ||||
1F | F: AGCAGGCCTACCCTGACC | 1.5 | 55 | 340 |
R: GCCTCCAGGAAGTTCTAAGGA | ||||
2 | F: GGAGGTCTCTGGGCATTAGC | 1.5 | 58 | 354 |
R: TCACTGATGAAACGGTCAGG | ||||
3 | F: TCTTCAGGGACAAGGAGTGG | 1.5 | 58 | 357 |
R: AGTGCTCATGGTGGGAGG | ||||
4 | F: CAGGGAAGACTAGGCCCTCT | 1.5 | 58 | 324 |
R: CTGTGAGCAGAGCTGAGTGG | ||||
5 | F: GAAACAAGCAGCATCACAGC | 1.5 | 58 | 220 |
R: GGCTGAAGCTTCTTTCAGGA | ||||
6 | F: TCTGGTGAGCAGTTGAGGTG | 1.5 | 58 | 202 |
R: GGTGGGCAAACTCTTACTGG | ||||
7 | F: CCCTCATTGACCCACTGTCT | 1.5 | 58 | 356 |
R: GCATGCAGAGCCACAGAGTA |
Note.-F: forward; R: reverse.
*The SNP rs1048661 is located in exon 1 and was analyzed in this amplicon.