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. 2008 Feb 6;9:5. doi: 10.1186/1471-2350-9-5

Table 1.

Primer sequences and PCR conditions for LOXL1 sequencing

Exon Primer Sequence MgCl2 (mM) Annealing Temperature (°C) Amplicon (bp)
1A F: TCCCAGCCTGTTGCTTATTC 1.5 55 326
R: AGGCCTGGTGGACAGAGAG
1B F: AAGCAAGGAGCCTTCCTGTC 1.5 55 260
R: GTACACCTGCCCGTTGTTCT
1C* F: GCAGGTGTACAGCTTGCTCA 1.5 55 464
R: ACACGAAACCCTGGTCGTAG
1D F: CTCCTACCCGCAGCAGTTC 1.5 55 227
R: GGTACTCGGGCAGCTCTTC
1E F: CGACCAGGGTTTCGTGTACT 1.5 55 280
R: AGGGTAGGCCTGCTCGAAG
1F F: AGCAGGCCTACCCTGACC 1.5 55 340
R: GCCTCCAGGAAGTTCTAAGGA
2 F: GGAGGTCTCTGGGCATTAGC 1.5 58 354
R: TCACTGATGAAACGGTCAGG
3 F: TCTTCAGGGACAAGGAGTGG 1.5 58 357
R: AGTGCTCATGGTGGGAGG
4 F: CAGGGAAGACTAGGCCCTCT 1.5 58 324
R: CTGTGAGCAGAGCTGAGTGG
5 F: GAAACAAGCAGCATCACAGC 1.5 58 220
R: GGCTGAAGCTTCTTTCAGGA
6 F: TCTGGTGAGCAGTTGAGGTG 1.5 58 202
R: GGTGGGCAAACTCTTACTGG
7 F: CCCTCATTGACCCACTGTCT 1.5 58 356
R: GCATGCAGAGCCACAGAGTA

Note.-F: forward; R: reverse.

*The SNP rs1048661 is located in exon 1 and was analyzed in this amplicon.