Table 1.
List of probes used to identify the Musa BAC clones sequenced as part of the present study. Estimated copy numbers of these sequences in rice, Sorghum and Musa are indicated for SbRPG (Sorghum bicolor) sequences. MA4 are BAC clones from M. acuminata cv. Calcutta-4 and MBP are BAC clones from M. balbisiana cv. Pisang Klutuk Wulung.
| Probe name and AC number* | Putative function | Estimated copy number in rice by Blast analysis (Rice genes locus identifier) | Estimated copy number in Sorghum by Southern blot analysis | Estimated copy number in Musa by Southern blot analysis | Number of identified Musa BAC clones | Number of Musa BAC fingerprint groups | Musa BAC clones sequenced (size) and AC number* |
|
SbRPG132 DQ185891 |
chlorophyll A-B binding protein type I |
6 Os01g41710.1 Os09g17740.1 Os01g52240.1 Os03g39610.1 Os07g37550.1 Os11g13890.2 |
4 | more than 4 | 23 | 6 | MA4_25J11 (105019 bp) AC186746 |
|
SbRPG373 DQ185892 |
hypothetical protein |
1 Os07g02340.1 |
1 | 1 | 29 | 2 | MA4_64C22 (80932 bp) AC186752 |
| MA4_8L21 (115790 bp) AC186748 | |||||||
|
SbRPG661 DQ185893 |
thioredoxin |
2 Os10g34520.1 Os07g10250.1 |
2 | 2–3 | 20 | 2 | MA4_54B05 (54106 bp) AC186753 |
| MA4_78I12 (150982 bp) AC186750 | |||||||
|
SbRPG748 DQ185894 |
porphobilinogen deaminase |
1 Os07g10250.1 |
1 | 1 | 1 | 1 | MA4_42M13 (29567 bp) AC186749 |
|
SbRPG851 DQ185895 |
phosphoglycerate kinase |
2 Os05g41640.1 Os01g58610.1 |
2 | 2–3 | 12 | 2 | MA4_112I10 (102441 bp) AC186756 |
| MA4_106O17 (143796 bp) AC186747 |
|||||||
|
SbRPG854 DQ185896 |
mitochondrial rieske protein |
2 Os04g32660.1 Os02g32120.1 |
2 | 2 | 5 | 1 | MA4_111B14 (146821 bp) AC186954 |
|
CIR257 DQ334868 |
GA-20 oxidase | - | - | - | 6 | 1 | MA4_82I11 (102232 bp) AC186955 |
| - | MBP_81C12 (142973 bp) AC186754 | ||||||
|
CIR560 DQ334869 |
beta 1–3 glucanase | - | - | - | 21 | 1 | MA4_54N07 (96443 bp) AC186751 |
| - | MBP_91N22 (154246 bp) AC186755 |
*AC number : accession number.