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. 2008 Apr 9;2(4):e214. doi: 10.1371/journal.pntd.0000214

Table 1. Short tandem repeat loci and PCR primers employed in this study, and their size in base pairs (bp).

Locus Genome location Repeat size PCR primers Amplicon size Repeat sequence Translated sequence
ML2172 2583816–2583839 3 bp F: ATCAACGCTGCGGTTTCGCAG 151 bp AGT (intergenic)
R: ATATGCATGCCGGTGGTGTGCT
ML2334 2785432–2785494 3 bp F: CGTTGGGTTCGATCGAATCGA 131 bp TTC (intergenic)
R: GCACGCCGACGGGAATAAGT
ML1505 1816857–1816892 6 bp F: ATGGCAACCATCTGGACCTACT 173 bp GCACCT Pro-Ala repeat
R: GGCCGCCGAACTGATCAA
ML1182 1381661–1381723 12 bp F: GTCAATGAGGTCGGGTTAGC 157 bp GAGGTTGTTGAG Glu-Val-Val-Glu repeat
R: GCGGTACGACAGTAGCTTCC
ML0058 73077–73139 21 bp F: ATTACCAATTTGCAAGGAGTGCTCAGCT 186 bp CTTGATCAAGTTGATTCCTGG (pseudogene)
R: GAAATTTGGCGGCCATATGCC
ML2469 2945487–2945555 23 bp F: GTCGCCCGGATACTGTTAAA 188 bp ATAATACTGTAGTGAACGACATC (intergenic)
R: TAAATCCGCTCCCAAATCTT
ML2418 2893248–2893761 25 bp F: GTCGAGACGATCCTTGTTGC 189 bp AGAATTTACCGGCGTTCA*ATAAGAA (pseudogene)
R: TGCGCTCCTAGTTGAGCTTC

*: single nucleotide mismatch in second copy