Table 2.
The average accuracy (A) and standard deviation (S) of all possible combination between tree building methods and distance estimators
Name | Type | NJ | BioNJ | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Dataset 1 | Dataset 2 | Dataset 3 | Dataset 4 | Dataset 5 | Dataset 6 | Dataset 7 | Dataset 1 | Dataset 2 | Dataset 3 | Dataset 4 | Dataset 5 | ||
k-tuple distance | A | 0.26110 | 0.51568 | 0.30889 | 0.52836 | 0.33298 | 0.40770 | 0.16618 | 0.26090 | 0.51966 | 0.30846 | 0.53144 | 0.33285 |
S | 0.04463 | 0.09604 | 0.04278 | 0.10363 | 0.04744 | 0.09988 | 0.07410 | 0.04407 | 0.09773 | 0.04266 | 0.10316 | 0.04766 | |
Tamura-Nei | A | 0.11246 | 0.35853 | 0.16092 | 0.58316 | 0.25570 | 0.14186 | 0.04860 | 0.10977 | 0.38250 | 0.16134 | 0.60882 | 0.25466 |
S | 0.03687 | 0.19900 | 0.03402 | 0.20987 | 0.04321 | 0.08386 | 0.02595 | 0.03662 | 0.19207 | 0.03489 | 0.19781 | 0.04212 | |
F84 | A | 0.00126 | 0.42550 | 0.04410 | 0.50200 | 0.07833 | 0.15035 | 0.02973 | 0.00144 | 0.43291 | 0.04274 | 0.51339 | 0.07830 |
S | 0.00471 | 0.18174 | 0.08308 | 0.17209 | 0.12747 | 0.14348 | 0.04503 | 0.00496 | 0.18516 | 0.08145 | 0.17759 | 0.12823 | |
Jukes-Cantor | A | 0.00043 | 0.43574 | 0.03222 | 0.64871 | 0.06525 | 0.14376 | 0.02238 | 0.00092 | 0.43934 | 0.03231 | 0.65129 | 0.06470 |
S | 0.00189 | 0.20702 | 0.07173 | 0.18384 | 0.12097 | 0.15540 | 0.04173 | 0.00380 | 0.21054 | 0.07228 | 0.18542 | 0.11992 | |
Kimura | A | 0.00103 | 0.42759 | 0.04484 | 0.50406 | 0.08002 | 0.15236 | 0.03014 | 0.00144 | 0.43457 | 0.04414 | 0.51556 | 0.07978 |
S | 0.00448 | 0.18031 | 0.08374 | 0.17061 | 0.12899 | 0.14257 | 0.04510 | 0.00486 | 0.18345 | 0.08259 | 0.17731 | 0.12914 |