Table 2.
Mature human let-7 family sequences in DNA and their hybridization Tm with perfectly complementary pairs
Name (control) | Sequencea | Tm (°C)b | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
let-7a | let-7b | let-7c | let-7d | let-7e | let-7f | let-7g | let-7i | miR-98 | ||
let-7a | TGAGGTAGTAGGTTGTATAGTT | 64 | 58 | 59 | 58 | 57 | 59 | 52 | 51 | 51 |
let-7b | TGAGGTAGTAGGTTGTG TG GTT | 58 | 70 | 65 | 51 | 51 | 54 | |||
let-7c | TGAGGTAGTAGGTTGTATGGTT | 59 | 64 | 67 | 51 | 51 | 52 | 52 | 51 | 51 |
let-7d | AGAGGTAGTAGGTTGCATAGT | 55 | 51 | 51 | 66 | |||||
let-7e | TGAGGTAGGAGGTTGTATAGT | 62 | 55 | 57 | 56 | 66 | 55 | |||
let-7f | TGAGGTAGTAGATTGTATAGTT | 57 | 62 | |||||||
let-7g | TGAGGTAGTAGTTTGTACAGT | 64 | 55 | |||||||
let-7i | TGAGGTAGTAGTTTGTGCTGT | 55 | 68 | |||||||
miR-98 | TGAGGTAGTAAGTTGTATTGTT | 63 |
aMismatch sequences compared to let-7a are shown in bold italics.
bHybridization Tm to the target is in bold; 51°C in italics, for reference, is not expected to produce signals in our design criteria.