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. 2008 Mar 17;205(3):595–610. doi: 10.1084/jem.20071985

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Copyright © 2008, The Rockefeller University Press

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Figure 3. — Discrimination between MHC I–associated peptides and contaminant peptides using bioinformatic tools. (A–E) For peptides eluted from EL4 cells, the y axis shows computed MHC binding scores determined with the smm (A and C), SYFPEITHI (B and D), and Rankpep (E) computational methods. The x axis cut at the selected binding thresholds. Each bar represents a sequenced peptide. Individual H2D^b-, H2K^b-, and Qa2-associated peptides (red) and contaminant peptides (blue) were scored as illustrated.