Table 3.
All-Atom RMSD for RAPPER Models for 15 Combinations of Template to Target.
| Family | ||||||||||
| Combination | Asp | Glob | Parv | Cyt3 | MHC_II_N | Fabp | Flav | Phoslip | Responce_reg | Ghf22 |
| 1 | 2.07 (99) | 1.37 (100) | 1.34 (100) | 1.11 (100) | 1.95 (96) | 2.22 (100) | 1.50 (100) | 2.85 (100) | 3.28 (100) | 2.61 (100) |
| 2 | 2.71 (100) | 2.87 (100) | 1.68 (99) | 2.25 (99) | 4.62 (98) | 2.10 (100) | 1.58 (99) | 2.73 (100) | 7.37 (100) | 2.42 (100) |
| 3 | 3.77 (100) | 2.88 (100) | 1.38 (100) | 2.20 (100) | 4.20 (98) | 2.56 (100) | 5.80 (100) | 2.57 (100) | 4.34 (100) | 2.26 (100) |
| 4 | 3.47 (100) | 2.95 (99) | 1.40 (100) | 3.94 (99) | 4.37 (96) | 2.60 (100) | 6.49 (98) | 2.85 (100) | 3.82 (99) | 2.51 (100) |
| 5 | 2.47 (99) | 1.62 (100) | 1.30 (96) | 1.70 (100) | 2.74 (98) | 2.16 (100) | 1.55 (100) | 2.70 (100) | 3.60 (98) | 2.51 (100) |
| 6 | 2.71 (99) | 1.68 (98) | 1.18 (95) | 1.25 (99) | 2.18 (98) | 2.16 (100) | 1.51 (99) | 2.64 (100) | 8.40 (88) | 2.43 (100) |
| 7 | 3.08 (99) | 1.59 (100) | 1.52 (100) | 1.46 (100) | 1.83 (95) | 2.13 (98) | 1.70 (100) | 2.67 (100) | 3.46 (100) | 2.52 (100) |
| 8 | 3.36 (100) | 2.94 (98) | 1.26 (96) | 1.94 (98) | 4.00 (95) | 2.28 (100) | 2.09 (100) | 2.50 (100) | 3.87 (99) | 2.31 (100) |
| 9 | 3.13 (99) | 2.68 (100) | 1.63 (93) | 2.35 (99) | 4.56 (98) | 2.19 (98) | 2.18 (99) | 2.83 (100) | 3.77 (100) | 2.17 (100) |
| 10 | 3.71 (99) | 2.63 (100) | 1.40 (100) | 2.27 (98) | 4.34 (98) | 2.30 (98) | 3.45 (93) | 2.52 (100) | 3.90 (100) | 2.17 (100) |
| 11 | 2.30 (99) | 1.74 (98) | 1.17 (95) | 1.75 (99) | 1.98 (95) | 2.20 (99) | 1.55 (99) | 2.65 (100) | 3.52 (98) | 2.41 (100) |
| 12 | 2.68 (99) | 1.68 (100) | 1.53 (93) | 2.01 (100) | 2.88 (98) | 2.05 (98) | 1.78 (100) | 2.64 (100) | 3.72 (99) | 2.56 (100) |
| 13 | 2.80 (99) | 2.08 (96) | 1.33 (93) | 1.77 (99) | 2.24 (98) | 2.17 (98) | 1.78 (99) | 2.64 (100) | 3.46 (100) | 2.50 (100) |
| 14 | 3.08 (99) | 2.52 (96) | 1.37 (93) | 2.16 (100) | 4.11 (95) | 2.14 (98) | 2.22 (100) | 2.78 (100) | 3.18 (67) | 2.20 (100) |
| 15 | 2.52 (99) | 1.99 (100) | 1.35 (93) | 1.75 (99) | 1.98 (95) | 2.01 (98) | 1.83 (99) | 2.98 (100) | 3.50 (100) | 2.43 (100) |
The all-atom RMSD in Ångstrom's for RAPPER models built in the standard mode for ten families. The combinations of template to target are as indicated in Table 3.2. To provide a fair comparison the percentage of residues used in the RMSD calculation is given in parentheses.