Table 4.
All-Atom RMSD for Models Built Using Different RAPPER Restraint Derivations and Templates and for Models Built by Modeller.
| A | B | C | D | E | F | G | H | |
| Family | RAPPER CA-trace | RAPPER optimal spatial restraints | RAPPER closest template | RAPPER all templates | CHORAL/ANDANTE + RAPPER | RAPPER all templates sampling by PID | MODELLER closest | MODELLER all templates |
| Aldosered | 1.23 | 1.47 | 1.54 | 1.59 | 1.41 | 1.45 | 1.45 | 1.23 |
| Asp | 1.74 | 1.89 | 1.97 | 2.05 | 1.86 | 1.90 | 1.92 | 1.74 |
| Az | 1.31 | 1.37 | 1.48 | 1.36 | 1.35 | 1.25 | 1.60 | 1.31 |
| Blm | 1.54 | 1.55 | 2.00 | 1.67 | 1.83 | 1.95 | 2.00 | 1.47 |
| Cyt3 | 1.21 | 1.12 | 1.08 | 1.67 | 1.18 | 1.15 | 1.26 | 1.19 |
| Cytc | 1.45 | 1.52 | 1.48 | 2.16 | 1.54 | 1.46 | 1.48 | 1.48 |
| Egf | 1.07 | 2.16 | 1.83 | 3.43 | 2.22 | 2.14 | 2.11 | 2.20 |
| Fabp | 1.37 | 1.98 | 2.20 | 2.05 | 2.35 | 2.21 | 2.14 | 2.13 |
| Flav | 1.24 | 1.49 | 1.45 | 1.75 | 1.44 | 1.69 | 1.61 | 1.63 |
| Fn3 | 1.37 | 1.60 | 2.11 | 1.98 | 2.14 | 2.24 | 2.03 | 1.97 |
| Ghf22 | 1.32 | 2.07 | 2.58 | 2.38 | 2.39 | 2.45 | 2.67 | 2.03 |
| Glob | 1.33 | 1.42 | 1.36 | 1.97 | 1.38 | 1.43 | 1.35 | 1.54 |
| Gluts | 1.25 | 2.88 | 3.19 | 3.66 | 2.92 | 2.84 | 3.19 | 2.89 |
| Gtp | 1.33 | 2.31 | 2.44 | 2.62 | 2.38 | 2.50 | 2.44 | 2.30 |
| Igvar-h | 1.52 | 1.72 | 2.01 | 3.24 | 2.49 | 2.54 | 2.31 | 2.98 |
| Igvar-l | 1.44 | 1.47 | 1.60 | 2.04 | 1.54 | 1.61 | 1.50 | 1.51 |
| Ltn | 1.53 | 1.36 | 1.36 | 1.63 | 1.34 | 1.41 | 1.27 | 1.34 |
| MHC | 1.58 | 1.77 | 1.93 | 1.91 | 1.76 | 1.82 | 2.04 | 2.12 |
| Parv | 1.18 | 1.40 | 1.23 | 1.33 | 1.32 | 1.27 | 1.27 | 1.14 |
| Phc | 1.14 | 1.56 | 1.68 | 1.59 | 1.53 | 1.58 | 1.99 | 1.74 |
| Phos | 1.34 | 2.95 | 2.84 | 2.65 | 2.67 | 2.54 | 2.67 | 2.37 |
| Resp | 1.23 | 2.69 | 3.14 | 3.41 | 3.06 | 3.35 | 3.03 | 3.26 |
| Sh3 | 1.38 | 2.09 | 2.22 | 2.24 | 2.21 | 2.18 | 2.50 | 2.07 |
| Tim | 1.40 | 1.24 | 1.42 | 1.63 | 1.26 | 1.33 | 1.41 | 1.37 |
| Mean | 1.35 | 1.80 | 1.92 | 2.17 | 1.90 | 1.93 | 1.97 | 1.88 |
| Family | RAPPER CA-trace | RAPPER optimal spatial restraints | RAPPER closest template | RAPPER all templates | CHORAL/ANDANTE + RAPPER | RAPPER all templates sampling by PID | MODELLER closest | MODELLER all templates |
| A | B | C | D | E | F | G | H | |
The all-atom RMSD given in Ångstrom's for RAPPER models built using A. Cα-trace mode; B. Using optimal spatial restraints mode using based on all templates; C. stranded restraint derivation using just the closest template by PID; D. stranded restraint derivation using all templates; E. restraints predicted by CHORAL and ANDANTE using all templates; F. using restraints based on the PID of the templates using all templates; G. using MODELLER based on just the closest templates and H. using MODELLER based on all the templates.