Table 4.
Analysis with 2 previous approaches that work without standard curves. Data for table 2 was analyzed as 3 subgroups of 5 samples each. For each curve, fluorescence of point 10 was subtracted as background from all points. With the DART-PCR approach, each curve was first analyzed separately for EA. R0 values (that correspond to F0) were calculated with the average EA for each subgroup. With the LinRegPCR approach, software version 7.2 was used to analyze each curve separately.
| DART-PCR approach | LinRegPCR approach | ||||||||||
| Target | Dilution step 1 : 4 | mean EA subgroup | Factor arithmetic mean | SEM | Precision relative error (%) | Accuracy relative error (%) | EA range | Factor arithmetic mean | SEM | Precision relative error (%) | Accuracy relative error (%) |
| SLC6A14 rat | 1 | 1.97 | 4.7 | 0.2 | 5 | 18 | 1.79 – 2.04 | 71.7 | 57 | 79 | >1000 |
| 2 | 1.94 | 6.4 | 1.6 | 25 | 61 | 1.71 – 2.09 | 0.94 | 0.23 | 24 | 77 | |
| 3 | 1.86 | 3.6 | 0.5 | 14 | 10 | 1.83 – 2.79 | >1000 | >1000 | 100 | >1000 | |
| 4 | 5.0 | 1.1 | 21 | 26 | 8.6 | 8.5 | 99 | 114 | |||
| SLC22A13 human | 1 | 1.70 | 3.2 | 0.1 | 3 | 21 | 1.64 – 2.01 | 6.4 | 2.9 | 45 | 59 |
| 2 | 1.70 | 3.3 | 0.1 | 2 | 17 | 1.68 – 2.24 | 254 | 227 | 89 | >1000 | |
| 3 | 1.71 | 3.0 | 0.1 | 1 | 25 | 1.52 – 1.93 | 412 | 412 | 100 | >1000 | |
| 4 | 3.1 | 0.1 | 4 | 23 | 36 | 36 | 100 | 797 | |||
| EMT pig | 1 | 3.0 | 0.2 | 6 | 25 | 1.67 – 2.02 | 8.8 | 7.7 | 87 | 121 | |
| 2 | 1.78 | 3.7 | 0.2 | 6 | 7 | 1.66 – 1.84 | 7.2 | 3.5 | 49 | 80 | |
| 3 | 1.87 | 6.8 | 2.9 | 43 | 69 | 1.60 – 1.75 | 11.7 | 4.9 | 42 | 193 | |
| 4 | 1.70 | 4.2 | 1.2 | 29 | 4 | 3.4 | 0.9 | 25 | 16 | ||
| ETT chicken | 1 | 1.87 | 4.9 | 1.2 | 25 | 22 | 1.77 – 1.91 | 3.0 | 0.6 | 19 | 24 |
| 2 | 1.86 | 3.0 | 0.8 | 26 | 25 | 1.76 – 1.88 | 2.5 | 0.4 | 18 | 37 | |
| 3 | 1.92 | 4.0 | 0.3 | 7 | 1 | 1.85 – 1.92 | 2.4 | 0.8 | 32 | 39 | |
| 4 | 4.0 | 0.3 | 7 | 0 | 6.4 | 0.7 | 12 | 59 | |||
| GAPDH human | 1 | 1.86 | 2.9 | 0.1 | 3 | 28 | 1.84 – 1.90 | 4.6 | 0.4 | 10 | 15 |
| 2 | 1.84 | 3.4 | 0.3 | 8 | 15 | 1.78 – 1.87 | 3.0 | 0.8 | 26 | 25 | |
| 3 | 1.81 | 4.0 | 0.2 | 4 | 1 | 1.77 – 1.86 | 6.3 | 0.5 | 7 | 58 | |
| 4 | 3.8 | 0.3 | 7 | 6 | 2.8 | 1.0 | 35 | 29 | |||
| Median: | 7 | 19.5 | Median: | 38.5 | 58.5 | ||||||