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. 2008 Feb 12;9:95. doi: 10.1186/1471-2105-9-95

Table 4.

Analysis with 2 previous approaches that work without standard curves. Data for table 2 was analyzed as 3 subgroups of 5 samples each. For each curve, fluorescence of point 10 was subtracted as background from all points. With the DART-PCR approach, each curve was first analyzed separately for EA. R0 values (that correspond to F0) were calculated with the average EA for each subgroup. With the LinRegPCR approach, software version 7.2 was used to analyze each curve separately.

DART-PCR approach LinRegPCR approach


Target Dilution step 1 : 4 mean EA subgroup Factor arithmetic mean SEM Precision relative error (%) Accuracy relative error (%) EA range Factor arithmetic mean SEM Precision relative error (%) Accuracy relative error (%)
SLC6A14 rat 1 1.97 4.7 0.2 5 18 1.79 – 2.04 71.7 57 79 >1000
2 1.94 6.4 1.6 25 61 1.71 – 2.09 0.94 0.23 24 77
3 1.86 3.6 0.5 14 10 1.83 – 2.79 >1000 >1000 100 >1000
4 5.0 1.1 21 26 8.6 8.5 99 114
SLC22A13 human 1 1.70 3.2 0.1 3 21 1.64 – 2.01 6.4 2.9 45 59
2 1.70 3.3 0.1 2 17 1.68 – 2.24 254 227 89 >1000
3 1.71 3.0 0.1 1 25 1.52 – 1.93 412 412 100 >1000
4 3.1 0.1 4 23 36 36 100 797
EMT pig 1 3.0 0.2 6 25 1.67 – 2.02 8.8 7.7 87 121
2 1.78 3.7 0.2 6 7 1.66 – 1.84 7.2 3.5 49 80
3 1.87 6.8 2.9 43 69 1.60 – 1.75 11.7 4.9 42 193
4 1.70 4.2 1.2 29 4 3.4 0.9 25 16
ETT chicken 1 1.87 4.9 1.2 25 22 1.77 – 1.91 3.0 0.6 19 24
2 1.86 3.0 0.8 26 25 1.76 – 1.88 2.5 0.4 18 37
3 1.92 4.0 0.3 7 1 1.85 – 1.92 2.4 0.8 32 39
4 4.0 0.3 7 0 6.4 0.7 12 59
GAPDH human 1 1.86 2.9 0.1 3 28 1.84 – 1.90 4.6 0.4 10 15
2 1.84 3.4 0.3 8 15 1.78 – 1.87 3.0 0.8 26 25
3 1.81 4.0 0.2 4 1 1.77 – 1.86 6.3 0.5 7 58
4 3.8 0.3 7 6 2.8 1.0 35 29
Median: 7 19.5 Median: 38.5 58.5