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Running times of the programs on 3 data sets of yeast protein interactions on a Pentium IV 3.0 GHz processor with 512 MB memory.
| Program | MIPS data (4874 nodes 15660 edges) | DIP data (4932 nodes 17491 edges) | BOND data (18692 nodes 59516 edges) |
|---|---|---|---|
| Our program | 10.06 s | 13.06 s | 1 m 06.63 s |
| CFinder | 17.45 s | 24.33 s | 2 m 22.46 s |
MIPS data: PPI_180105.tab from MIPS (1/18/2005).
DIP data: yeast20071104.lst from DIP (11/04/2007).
BOND data: data from BOND (11/9/2007).
