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. 2008 Mar;178(3):1517–1532. doi: 10.1534/genetics.107.075200

TABLE 3.

Mean and standard deviation (in parentheses) of r2 for a sample of size 25 (104 iterations) under the “multiple-mergers” process (η = 0) and the mixture-distribution process (η = 1)

Ancestral process
ω θ Multiple mergers Mixture distribution
0.1 1 0.055 (0.073) 0.106 (0.143)
0.1 0.073 (0.095) 0.107 (0.180)
0.01 0.149 (0.195) 0.159 (0.238)
0.230a (0.299)
0.001 0.251 (0.352)
0.409a (0.373)
Predicted 0.416 0.232
0.5 1 0.073 (0.104) 0.162 (0.232)
0.1 0.119 (0.196) 0.164 (0.269)
0.01 0.125 (0.275) 0.183 (0.354)
0.205a (0.279)
0.001 0.176 (0.370)
0.212a (0.341)
Predicted 0.214 0.232

In each case φ = 1. The predicted values are ϒ(ω) for the multiple-mergers process and ϒ2(1, 1, ω) for the mixture-distribution process (see Table 2).

a

Low-frequency (<10%) variants excluded.