In vivo and in vitro ubiquitination of TSC2 by FBW5–DDB1–CUL4 ligase. (A) CUL4, DDB1, and FBW5 are required for TSC2 ubiquitination in vivo. U2OS cells were cotransfected with plasmids expressing HA-TSC2 and Flag-ubiquitin and siRNA targeting CUL4A/B, DDB1, or FBW5. Cells were lysed 24 h after transfection, and TSC2 ubiquitination was analyzed by immunoprecipitating HA-TSC2 and blotted with an antibody recognizing Flag. (B) In vitro ubiquitination of TSC2 by FBW5 and CUL4A. 293T cells were cotransfected with plasmids expressing the indicated myc-tagged proteins. Individual protein complex was eluted by incubating with molar excess myc antigen peptide and mixed as indicated with substrate GST-TSC2 in the presence of E1, E2, ubiquitin, and ATP. Reaction mixtures were incubated for 30 min, terminated by boiling directly in SDS sample buffer, resolved by SDS-PAGE, and immunoblotted with indicated antibodies. (C) Drop-out assay was carried out as described in B to determine the specificity of in vitro TSC2 ubiquitination.