Skip to main content
. 2005 Aug;14(8):2018–2029. doi: 10.1110/ps.051372205

Table 3.

Diffusion tensor analysis from R2 and R1 data at 600 MHz of NusA(353–416) and NusA(431–490)

Diffusion tensor statisticsa
Isotropic Axially symmetric (prolate) Axially symmetric (oblate) Anisotropic
χ2(5%) χ2exp χ2(5%) χ2exp χ2(5%) χ2exp χ2(5%) χ2exp
NusA(353–416) 44.2 207.6 40.0 48.5 39.7 48.5 37.0 19.0
NusA(431–490) 31.4 55.98 26.6 24.3 28.0 39.7 23.4 22.9
Diffusion tensor statisticsb
Dzz(107s1) Dyy(107s1) Dxx(107s1) ζ η τc,eff[ns]
a χ2(5%) corresponds to the α= 0.05 confidence limit for the fit derived from 500 Monte Carlo simulations, χ2exp refers to the value of the target function used for the fit. Values of χ2(5%) and χ2exp for accepted models are shown in bold italic. An F-statistic was used to differentiate between the prolate (four parameters) and the fully asymmetric model (six parameters) for NusA(431–490). The critical values for the F-statistic with α= 0.1 amount to Fexp = 4.6 and F(10%) = 22.3, indicating that the improvement of the fit upon using the six-parameter model is not statistically relevant (Mandel et al. 1995; Dosset et al. 2000). NusA(431–490) is thus best described by a prolate axially symmetric diffusion model, NusA(353–416) by an anisotropic diffusion tensor.
b Diffusion tensor components from R2 and R1 data at 600 MHz [NusA(353–416): 33 N-HN vectors; NusA(431–490): 21 N-HN vectors] for accepted models of NusA(353–416) and NusA(431–490). For a prolate diffusion tensor (Dzz − Dyy ≥ Dyy − Dxx) the anisotropy and rhombicity are defined as ζ = 2Dzz/(Dxx+Dyy) and η = 3/2 · (Dyy − Dxx)/Dzz · ζ/(ζ − 1), respectively, and characterize the deviations from a spherical top (Fushman et al. 2004). The effective rotational correlation time is related to the diffusion tensor components via τc,eff = 1/(2Dxx+2Dyy+2Dzz). Parameter uncertainties of the diffusion parameters were taken from 500 Monte Carlo simulations.
NusA(353–416) 2.31 ± 0.05 1.73 ± 0.06 1.22 ± 0.05 1.6 ± 0.1 0.91 ± 0.19 9.5 ± 0.3
NusA(431–490) 3.11 ± 0.12 2.01 ± 0.07 2.01 ± 0.07 1.6 ± 0.1 0 7.0 ± 0.2