TABLE 1.
Species | Tentative virus name | Abbre- viation | Accession no. | No. of animalsa/no. of locations (country) and/or cell line | % Identity, with most similar LCVb | % Identity to EBVc
|
|
---|---|---|---|---|---|---|---|
na | aa | ||||||
Old World primates | |||||||
Chimpanzee | Pan troglodytes LCV1 | PtroLCV1 | AF534226 | 4/2, 18/1 (Ivory Coast); Austin, EB176 | 97, PpanLCV1 | 92 | 93 |
Bonobo | Pan paniscus LCV1 | PpanLCV1 | AF534220 | 2/1 | 97, PtroLCV1 | 93 | 93 |
Gorilla | Gorilla gorilla LCV1 | GgorLCV1 | AF534225 | 5/2; EBJC | 100, Gorilla LCVe | 91 | 94 |
Gorilla | Gorilla gorilla LCV2 | GgorLCV2 | AY129395 | 7/4 | 78, PpygLCV1 and GgorLCV1 | 78 | 82 |
Orangutan | Pongo pygmaeus LCV1 | PpygLCV1 | AY129398 | 8/5 | 85, MfasLCV1 | 82 | 86 |
White-cheeked gibbon | Hylobates leucogenys LCV1 | HleuLCV1 | AY174068 | 4/1 (Vietnam) | 82, HlarLCV1 | 73 | 83 |
White-handed gibbon | Hylobates lar LCV1 | HlarLCV1 | AY196147 | 1/1 | 82, HleuLCV1 | 77 | 84 |
Hanuman langur | Semnopithecus entellus LCV1 | SentLCV1 | AF534223 | 2/1 | 90, EBVe | 91 | 94 |
Hamadryas baboon | Papio hamadryas LCV1 | PhamLCV1 | AY174069 | 594 | 100, CeHV12e | 92 | 95 |
Hamadryas baboon | Papio hamadryas LCV2 | PhamLCV2 | AF534229 | 2/2 | 88, CeHV12 | 90 | 91 |
Mandrill | Mandrillus sphinx LCV1 | MsphLCV1 | AF534227 | 2/1 | 92, MsphLCV2 | 90 | 91 |
Mandrill | Mandrillus sphinx LCV2 | MsphLCV2 | AY174066 | 1/1 | 92, MsphLCV1 | 91 | 93 |
Black and white colobus | Colobus guereza LCV1 | CgueLCV1 | AF534219 | 6/2 | 96, MfasLCV1 | 91 | 94 |
Western red colobus | Piliocolobus badius LCV1 | PbadLCV1 | AF534228 | 2/1 (Ivory Coast) | 96, MfasLCV1 | 86 | 94 |
Black mangabey | Cercocebus aterrimus LCV1 | CateLCV1 | AY174067 | 1/1 | 89, MfasLCV1 | 88 | 91 |
Rhesus macaque | Macaca mulatta LCV1 | MmulLCV1d | AY172955 | 24/2; LCL278 | 98-100, CeHV15e | 91-92 | 91-93 |
Cynomolgus macaque | Macaca fascicularis LCV1 | MfasLCV1d | AF534221 | 1/1 | 95-97, MmulLCV1 | 92-93 | 93-94 |
Japanese macaque | Macaca fuscata LCV1 | MfusLCV1 | AF534224 | 2/1 | 98-99, MmulLCV1 | 91 | 93 |
Japanese macaque | Macaca fuscata LCV2 | MfusLCV2 | AY172954 | 1/1 | 93-95, MmulLCV1 | 91 | 91 |
Wanderoo | Macaca silenus LCV1 | MsilLCV1d | AF534222 | 5/2 | 96-99, MfasLCV1 | 90-92 | 93 |
Magot | Macaca sylvanus LCV1 | MsylLCV1 | AY172956 | 1/1 | 88, MfasLCV1 | 82 | 91 |
Tibet macaque | Macaca tibetana LCV1 | MtibLCV1 | AY174065 | 2/2 | 86, MfasLCV1 | 82 | 93 |
Patas monkey | Erythrocebus patas LCV1 | EpatLCV1 | AY196148 | 1/1 | 91, MmulLCV1 | 90 | 96 |
New World primates | |||||||
Common squirrel monkey | Saimiri sciureus LCV1 | SsciLCV1 | AY172953 | 1/1 | 95, SaHV-3e | 67 | 68 |
Common squirrel monkey | Saimiri sciureus LCV2 | SsciLCV2 | AY139024 | 3/3 | 69, SsciLCV1 | 69 | 70 |
Saki | Pithecia pithecia LCV1 | PpitLCV1 | AY139025 | 3/2 | 72, CjacLCV1 | 64 | 68 |
White-fronted capuchin | Cebus albifrons LCV1 | CalbLCV1 | AY139027 | 2/2 | 62, SsciLCV1 | 59 | 62 |
Black spider monkey | Ateles paniscus LCV1 | ApanLCV1 | AY139028 | 1/1 | 69, PpitLCV1 | 65 | 72 |
Black-pencilled marmoset | Callithrix penicillata LCV1 | CpenLCV1 | AY139026 | 2/1 | 96, CjacLCV1 | 68 | 68 |
Common marmoset | Callithrix jacchus LCV1 | CjacLCV1d | AY174064 | 11/2 | 96-100, CalHV-3e | 67-68 | 67-68 |
The number of animals positive for the indicated LCV species in panherpesvirus consensus PCR. For GoLCV2, PpygLCV1, HlarLCV1, and HleuLCV1, the data are from consensus PCR and specific PCR.
Determined from pairwise alignments of each novel DPOL gene sequence (166 to 175 bp) with the DPOL gene sequences of known LCV and with the novel DPOL gene sequences determined in this study.
Determined from pairwise alignments of 166 to 175 bp (left column) and 53 to 58 amino acids (right column).
In Macaca mulatta, Macaca fascicularis, Macaca silenus, and Callithrix jacchus, sequences of 96 to 100% nucleic acid (na) identity were found, respectively. They were assigned to the same virus species (MmulLCV1, MfasLCV1, MsilLCV1, and CjacLCV1, respectively).
Accession number is given in the text.