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. 2004 Oct;13(10):2753–2765. doi: 10.1110/ps.04774004

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Copyright © Copyright 2004 The Protein Society

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Figure 7. — The RMSDs of nat-1ubq, eng-1ubq, and non-1ubq in 9.0-nsec explicit water MD simulations. The units of RMSDs are shown in Å. (A) The RMSDs of the whole proteins (nat-1ubq, eng-1ubq, and non-1ubq) as a function of simulation time. (B) The RMSDs of nat-1ubq, eng-1ubq, and non-1ubq atoms. (C) The RMSDs of building block-I of nat-1ubq, eng-1ubq, and non-1ubq as a function of simulation time. (D) The RMSDs of building block-II of nat-1ubq, eng-1ubq, and non-1ubq as a function of simulation time. (E) The RMSDs of building block-III of nat-1ubq, eng-1ubq, and non-1ubq as a function of simulation time.