Table 5.

The Z-scores for 25 monomeric and 31 docking Rosetta decoy sets

Monomeric decoys			Docking decoys
PDB ID	KMBa	DFIRE-SCMb	PDB ID	KMBa	DFIRE-SCMb
1a32	4.59	1.92	1a2yc	2.47	0.97
1ail	8.22	2.17	1qfuc	0.01	2.14
1am3	2.39	2.14	1cz8c	6.04	1.45
1bq9	6.37	3.07	1wejc	0.79	−0.45
1cc5	−1.53	1.46	1dqjc	5.80	1.65
1cei	5.80	4.38	1e6jc	5.28	1.96
1csp	2.43	4.57	1egjc	0.72	1.04
1ctf	6.01	4.11	1eo8c	0.96	0.82
1dol	0.57	3.34	1fdlc	2.66	1.13
1hyp	3.30	5.21	1fj1c	1.51	2.01
1lfb	0.45	1.90	1g7hc	3.38	1.13
1msi	3.82	2.28	1ic4c	5.29	1.82
1mzm	2.79	2.07	1jhlc	2.31	0.72
1orc	3.57	2.83	1jrhc	8.56	1.35
1pgx	4.47	3.17	1mlcc	2.33	1.20
1ptq	3.18	0.48	1ncac	0.50	2.23
1r69	3.36	4.52	1nsnc	−0.36	0.25
1tif	7.09	2.56	1ospc	7.82	1.61
1tuc	4.38	2.10	1acb	11.33	1.84
1utg	4.80	1.25	1avz	1.05	0.73
1vcc	5.50	2.73	1brs	3.43	1.44
1vif	4.47	2.27	1cho	12.06	2.51
2fxb	2.48	3.86	1ugh	2.34	2.52
5icb	5.61	3.95	2btf	4.18	1.73
5pti	6.62	1.92	1mda	−1.03	0.52
			1ppf	8.77	1.95
			1spb	14.06	3.36
			2ptc	6.18	1.69
			1cse	9.16	1.91
			2pcc	−0.87	0.59
			1fin	3.65	3.08
Average	4.03 ± 2.18	2.81 ± 1.16		4.21 ± 3.91	1.51 ± 0.80
%successd	88%	96%		74%	74%

^a The Kortemme-Morozov-Baker empirical free-energy function enhanced by orientation-dependent hydrogen bonding potential (Kortemme et al. 2003).

^b This work.

^c Antibody antigen complex.

^d The success rate based on the number of decoy sets with Z-score >1 as in Ref. (Kortemme et al. 2003).