Table 3.
Parameters of the TMD-simulations
| Initial conformation | Final conformation | Simulation time (psec) | Atoms to which constraint is applied | Box size (Å) | Number of solvent molecules |
| bWTin | bWTac | 500 | 1–2261 | 66.4 | 3733 |
| bΔAin | bΔAac | 500 | 1–2158 | 66.4 | 3792 |
| rΔAin | rΔAac | 500 | 1–2145 | 66.5 | 3802 |
| bWTac | bWTin | 500 | 1–2261 | 68.4 | 4235 |
| bΔAac | bΔAin | 500 | 1–2158 | 68.4 | 4305 |
| rΔAac | rΔAin | 500 | 1–2145 | 68.0 | 4163 |