Table 3.
Summary from validation of SNPs
Putative SNPs | 724 |
Put. SNPs with assay successfully made | 648 |
Putative SNPs genotyped | 594 |
Failed assays | 175 |
SNPs w/all animals heterozygous | 9 |
SNPs w/all animals homozygous | 92 |
Polymorphic SNPs | 318 |
Contigs with putative SNPs | 415 |
Contigs with real SNPs | 235 |
Contigs with: | |
1 real SNP | 172 |
2 real SNPs | 48 |
3 real SNPs | 11 |
4 real SNPs | 2 |
5 real SNPs | 2 |