Table 2.
Significant nonredundant gene groupings identified by the algorithm
| Bonferroni p value | Sorting index | Cluster ID | Cluster size | Complexa |
|---|---|---|---|---|
| 6.82E-228 | 32.4 | 231 | 18 | V-ATPASE (18) |
| 1.10E-84 | 51.9 | 272 | 2 | PI3 Kinase (2) |
| 3.07E-32 | 3.0 | 252 | 2 | |
| 1.46E-24 | 7.3 | 266 | 2 | |
| 4.16E-23 | 81.0 | 202 | 2 | CLASS D VPS (2) |
| 2.48E-19 | 76.9 | 160 | 2 | Overlapping ORFs (2) |
| 1.51E-13 | 87.6 | 121 | 3 | VPS55/68 (2) |
| 3.23E-11 | 88.2 | 247 | 3 | CLASS B VPS (3) |
| 9.64E-11 | 29.7 | 220 | 2 | Overlapping ORFs (2) |
| 1.33E-10 | 20.1 | 222 | 2 | |
| 1.92E-10 | 63.8 | 150 | 2 | GARP (2) |
| 3.95E-10 | 25.3 | 169 | 4 | INO80 (2) |
| 5.00E-09 | 6.6 | 163 | 2 | |
| 7.16E-09 | 17.1 | 249 | 3 | RSC (2) |
| 9.76E-09 | 97.0 | 211 | 10 | Retromer (4) |
| 2.70E-07 | 99.3 | 200 | 2 | Retromer (2) |
| 5.56E-07 | 13.5 | 154 | 6 | SWR-C (6) |
| 1.52E-05 | 59.0 | 233 | 13 | ESCRT (13) |
| 4.34E-05 | 10.2 | 86 | 2 | |
| 1.46E-04 | 51.9 | 164 | 9 | COG/YPT6 (4/4) |
| 1.05E-03 | 8.3 | 213 | 3 |
The list of ORFs included in each cluster is in Table S3.
a The name of a protein complex is shown when at least two genes in a cluster encode physically interacting proteins (number of subunits present in the cluster is indicated in parentheses). When more than one complex is represented, the one with the greatest number of included subunits is shown.