TABLE 1.
DNA Sequencing Reaction Conditions Used to Generate the Top Three Quality Scores for Templates A, B, and C by Instrument
Template | Instrumenta | Rank | Quality Score (q20) | WTR Length (cm)b | Primer (pmol) | Template (μg) | Reaction Volume (μl) | DNA Sequencing Chemistryc |
A | 377 | 1 | 837 | 48 | 3.2 | 300 | 20 | BDTv3.1 |
2 | 713 | 48 | 15.0 | 1140 | 40 | BDTv3.1 | ||
3 | 690 | 48 | 3.2 | 300 | 20 | BDT v3.1 | ||
3100 | 1 | 815 | 80 | 12.5 | 380 | 10 | BDTv3.1 | |
2 | 765 | 80 | 5.0 | 630 | 20 | BDTv3.1 | ||
3 | 765 | 80 | 3.2 | 494 | 20 | BDTv1.1 | ||
3700 | 1 | 767 | 50 | 10.0 | 200 | 10 | BDTv3.1 | |
2 | 715 | 50 | 10.0 | 200 | 10 | BDTv3.1 | ||
3 | 708 | 50 | 10.0 | 200 | 10 | BDTv3.1 | ||
B | 377 | 1 | 951 | 48 | 4.8 | 400 | 20 | dGTpv3.0 |
2 | 856 | 48 | 3.2 | 300 | 20 | BDTv3.1 | ||
3 | 793 | 48 | 5.0 | 800 | 20 | dGTpv3.0 | ||
3100 | 1 | 879 | 80 | 5.0 | 730 | 20 | BDTv3.0:dGTpv3.0 (4:1) | |
2 | 871 | 80 | 3.2 | 494 | 20 | BDTv3.0:dGTpv2.0 (2:1) | ||
3 | 854 | 80 | 5.0 | 730 | 20 | dGTpv3.0 | ||
3700 | 1 | 784 | 50 | 4.0 | 200 | 15 | BDTv3.1 | |
2 | 767 | 50 | 3.5 | 365 | 10 | BDTv3.1 | ||
3 | 758 | 50 | 3.5 | 365 | 10 | BDTv3.0 | ||
C | 377 | 1 | 908 | 48 | 4.8 | 400 | 20 | dGTpv3.0 |
2 | 820 | 48 | 3.2 | 300 | 20 | BDTv3.1 | ||
3 | 729 | 48 | 15.0 | 2550 | 40 | dGTpv3.0 | ||
3100 | 1 | 881 | 80 | 5.0 | 850 | 20 | dGTpv3.0 | |
2 | 844 | 80 | 5.0 | 850 | 20 | BDTv3.0:dGTpv3.0 (4:1) | ||
3 | 835 | 80 | 3.2 | 494 | 20 | BDTv3.0:dGTpv2.0 (2:1) | ||
3700 | 1 | 805 | 50 | 10.0 | 400 | 10 | BDv3.1 | |
2 | 788 | 50 | 10.0 | 400 | 10 | dGTp v3.0 | ||
3 | 777 | 50 | 4.0 | 200 | 15 | BDT 3.1 |
aInstrument: Applied Biosystems Models 377, 3100, and 3700 sequencers.
bWTR Length: well-to-read length (cm).
cChemistry: Applied Biosystems ABI Prism big dye terminator (BDT) and dGTp big dye terminator ready reaction mixes. Parentheses indicate the ratio of BDT to dGTp.