TABLE 1.
Comparison of the VP7 deduced amino acid sequence identities of strains CMP178 and CMP213 with the amino acid sequences of 15 known G genotypes
| Strain (origin)a | G genotype | % VP7 amino acid identityb
|
|
|---|---|---|---|
| CMP178 | CMP213 | ||
| Wa (human) | 1 | 78.2 | 80.7 |
| Hu/5 (human) | 2 | 72.3 | 74.1 |
| YO (human) | 3 | 84.6 | 94.4 |
| AU-1 (human) | 3 | 84.6 | 95.4 |
| P (human) | 3 | 85.5 | 95.1 |
| CP-1 (bovine) | 3 | 85.5 | 96.8 |
| PP-1 (bovine) | 3 | 85.5 | 96.8 |
| A131 (porcine) | 3 | 85.8 | 94.7 |
| A138 (porcine) | 3 | 84.9 | 96.0 |
| 4F (porcine) | 3 | 86.1 | 95.0 |
| Gottfried (porcine) | 4 | 74.5 | 77.2 |
| OSU (porcine) | 5 | 92.3 | 86.0 |
| JL49 (porcine) | 5 | 92.6 | 86.3 |
| H-1 (equine) | 5 | 92.9 | 86.3 |
| A46 (porcine) | 5 | 92.6 | 86.7 |
| 134/04-15 (porcine) | 5 | 93.2 | 86.3 |
| NCDV (bovine) | 6 | 81.5 | 83.5 |
| PO-13 (avian) | 7 | 58.9 | 56.7 |
| B37 (bovine) | 8 | 78.2 | 82.5 |
| 116E (human) | 9 | 80.9 | 83.5 |
| B223 (bovine) | 10 | 78.8 | 81.1 |
| YM (porcine) | 11 | 88.3 | 86.7 |
| L26 (human) | 12 | 79.4 | 80.7 |
| L338 (equine) | 13 | 77.6 | 80.7 |
| CH3 (equine) | 14 | 78.5 | 84.2 |
| Hg18 (bovine) | 15 | 77.6 | 77.2 |
a
The GenBank accession numbers of the VP7 genes are as indicated for the following strains: Wa, K02033; Hu/5, A01028; YO, D86284; AU-1, D86271; P, AB118024; CP-1, AF448852; PP-1, AF427124; Gottfried, X06386; OSU, X04613; JL49, AY538665; H-1, AF242393; A46, L35054; 134/04-15, DQ062572; NCDV, M12394; PO-13, D82979; B37, J04334; 116E, L14072; B223, X57852; YM, M23194; L26, M58290; L338, D13549; CH3, D25229; and Hg18, AF237666.
b
Boldface data indicate percentages of the highest sequence identity that CMP178 and CMP213 shared with the corresponding reference genotypes.