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. 2008 Jan 30;82(8):4149–4153. doi: 10.1128/JVI.02242-07

TABLE 3.

Putative CD8 and CD4 epitopes containing mutations and amino acid and codon changes for these epitopes in animals 4 and 5a

Epitope Gag peptide(s) Epitope-containing sequence Amino acid change
Codon change
Position From To Position From To
Animal 4
CD8 epitopes
    Original 10, 11 LDRFGLAESLL 46 L I 671 TTA ATA
48 E D 679 GAA GAC
107, 108 DRQAGFLGLGP 429 D E 1822 GAC GAA
432 A V 1830 GCG GTG
    New 25, 26 KQIVQRHLVVE 101 K R 837 AAA AGA
35, 36 GGNYVHLPLSP 145 V I 968 GTC ATC
CD4 epitopes
    Original None
    New 25, 26 KQIVQRHLVVE 101 K R 837 AAA AGA
97 RGPRKPIKCWNCGKE 385 R K 1689 AGG AAG
Animal 5
CD8 epitopes
    Original 35, 36 GGNYVHLPLSP 145 V A 969 GTC GCC
    New 101 HSARQCRAPRRQGCW 402 S P 1739 TCT CCT
L 1739, 1740 CTT
CD4 epitopes
    Original None
    New 15 CQKILSVLAPLVPTG 59 K R 711 AAA AGA
101 HSARQCRAPRRQGCW 402 S P 1739 TCT CCT
L 1739, 1740 CTT
a

Changes are in boldface.