Table 3.

Results for different filters applied to gene groups (k = 1,000).

K	500	1,000	2,000	3,000
Single Species cluster	422 (84.4%)	904 (90.4%)	1897 (94.9%)	2894 (96.5%)
# of Phenocopy-Pairs (of 25)	25 (100%)	13 (52%)	12 (48%)	8 (32%)
Cluster w/PT-Sim = 0.4	92 (18.4%)	293 (29.3%)	526 (26.3%)	810 (40.5%)
# Genes	3221	5886	6379	6878
Cluster w/GO-Sim = 0.4	51 (10.2%)	206 (20.6%)	522 (26.1%)	921 (46.1%)

Precision and recall values of function prediction in all clusters and with varying k selected by different combinations of the filters defined in Table 2.