Table 1.
Summary of data sources available in release 6.0 of FlyMine
| Data | Organism | Source | Reference |
| Genome annotation | D. melanogaster, A. gambiae, D. pseudoobscura, A. mellifera | FlyBase Ensembl |
[50,51] [39,40] |
| Protein annotation | D. melanogaster, D. pseudoobscura, A. gambiae, A. mellifera, C. elegans, S. cerevisiae | UniProtKB version 8.9 | [35,36] |
| Protein family and domain annotation | D. melanogaster, A. gambiae, C. elegans | InterPro version 12.0 | [41,42] |
| Protein-protein interactions | D. melanogaster, C. elegans, S. cerevisiae | IntAct | [65-74]* |
| RNAi phenotypes |
C. elegans D. melanogaster |
WormBase Drosophila RNAi screening center |
[75-78] [79-85] |
| Three-dimensional structural domain predictions | D. melanogaster | Kenji Mizuguchi | Personal communication |
| MicroArray GeneExpression | D. melanogaster | ArrayExpress FlyAtlas |
[86] [52] |
| Orthologues/paralogues | D. melanogaster, A. gambiae, C. elegans, A. mellifera, D. pseudoobscura + others (see [64]) | InParanoid | [45,46] |
| GO annotation and the Gene Ontology | D. melanogaster, C. elegans, A. gambiae + others (see [64]) | Gene Ontology site UniProtKB GOA |
[87,88] [35,36] |
| DNAse1 footprints. | D. melanogaster | flyreg version 2.0 | [89,90] |
| Transcriptional cis-regulatory modules | D. melanogaster | REDfly | [91] |
| Whole genome tiling path | D. melanogaster | Cambridge University | |
| INDAC microarray oligo set | D. melanogaster | INDAC Version 1.0 | [92] |
| P-element insertions and deletions | D. melanogaster | DrosDel | [43,44] |
| Homophila | Human disease to D. melanogaster | Homophila version 2.1 | [93,94] |
*In addition, a number of protein interactions and complexes from smaller scale experiments are available (see the Protein Interaction aspect on the FlyMine web site for details).