Table 1.
Forty-two pathogens included in PHIDIAS
| Pathogens (disease) | CDC/NIAID category | No. of genomes | Phinfo | Pacodom | Phinet | |
| 1 | Bacillus anthracis (anthrax) | A/A | 3 | √ | 4,588 | √ |
| 2 | Brucella spp. (brucellosis) | B/B | 4 | √ | 4,267 | √ |
| 3 | Burkholderia mallei (glanders) | B/B | 1 | √ | 4,679 | √ |
| 4 | Burkholderia pseudomallei (Melioidosis) | B/B | 2 | √ | 5,093 | |
| 5 | Campylobacter jejuni (food safety threat) | /B | 2 | 3,235 | ||
| 6 | Clostridium botulinum (botulism) | A/A | 0 | √ | N/A | √ |
| 7 | Clostridium perfringens (epsilon toxin) | B/B | 1 | 3,770 | ||
| 8 | Coxiella burnetii (Q fever) | B/B | 1 | √ | 3,032 | √ |
| 9 | Escherichia coli (food safety threat) | B/B | 6 | √ | 5,440 | √ |
| 10 | Francisella tularensis (tularemia) | A/A | 2 | √ | 3,057 | √ |
| 11 | Helicobacter spp. (gastric ulcer) | 5 | 3,374 | |||
| 12 | Legionella pneumophila (legionnaires' disease) | 3 | 3,974 | |||
| 13 | Listeria monocytogenes (food safety threat) | /B | 2 | 3,999 | ||
| 14 | Mycobacterium tuberculosis (tuberculosis) | /C | 2 | √ | 3,991 | |
| 15 | Rickettsia prowazekii (typhus fever) | /C | 1 | √ | 2,129 | √ |
| 16 | Rickettsia rickettsii (Rocky Mountain spotted fever) | /C | 0 | √ | N/A | √ |
| 17 | Salmonella enterica (food safety threat) | B/B | 4 | √ | 5,150 | √ |
| 18 | Shigella spp. (food safety threat) | B/B | 5 | √ | 5,211 | √ |
| 19 | Vibrio spp. (water safety threat) | B/B | 5 | 5,449 | ||
| 20 | Yersinia pestis (plague) | A/A | 5 | √ | 4,828 | √ |
| 21 | Crimean-Congo hemorrhagic fever virus (tickborne hemorrhagic fever) | C/C | 1 | √ | 4 | √ |
| 22 | Eastern equine encephalitis virus (encephalitis) | B/B | 0 | √ | N/A | √ |
| 23 | Foot-and-mouth disease virus (foot-and-mouth disease) | 7 | √ | 3 | ||
| 24 | Guanarito virus (viral hemorrhagic fever) | A/A | 1 | √ | 0 | √ |
| 25 | Human immunodeficiency virus (AIDS) | 2 | √ | 8 | ||
| 26 | Junin virus (viral hemorrhagic fever) | A/A | 1 | √ | 0 | √ |
| 27 | Lassa virus (viral hemorrhagic fever) | A/A | 1 | √ | 0 | √ |
| 28 | Louping ill virus (encephalomyelitis) | 1 | √ | 6 | √ | |
| 29 | Machupo virus (viral hemorrhagic fever) | A/A | 1 | √ | 0 | √ |
| 30 | Marburg virus (viral hemorrhagic fever) | A/A | 1 | √ | N/A | √ |
| 31 | Measles virus (measles) | 1 | √ | 0 | √ | |
| 32 | Newcastle Disease Virus (Newcastle disease) | 0 | √ | N/A | ||
| 33 | Powassan virus (encephalitis) | 0 | √ | N/A | √ | |
| 34 | Reston ebola virus (viral hemorrhagic fever) | A/A | 1 | √ | 1 | √ |
| 35 | Rift Valley fever virus (Rift Valley fever) | /A | 1 | √ | 3 | √ |
| 36 | Variola virus (smallpox) | A/A | 2 | √ | 129 | |
| 37 | Venezuelan equine encephalitis virus (viral encephalitis) | B/B | 1 | √ | 8 | √ |
| 38 | Yellow fever virus (yellow fever) | /C | 1 | √ | 5 | √ |
| 39 | Cryptosporidium parvum (cryptosporidiosis) | B/B | 0 | √ | N/A | |
| 40 | Coccidioides immitis (meningitis) | 0 | √ | N/A | ||
| 41 | Phakopsora pachyrhizi (soybean rust) | 0 | √ | N/A | √ | |
| 42 | Plasmodium falciparum (malaria) | 0 | √ | N/A | ||
| Total (42 pathogens) | 77 | 37 | 75,433 | 27 | ||
The program includes 20 bacteria (54 genomes), 18 viruses (23 genomes), and 4 parasites. The database contains 75,433 conserved domains (7,919 unique PSSMs) and PHI network information for 27 pathogens.