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. 2008 Mar 20;8:48. doi: 10.1186/1471-2180-8-48

Table 3.

Results for 12 NTM isolates for which PRA-hsp65 gave incorrect species identification as determined by hsp65 sequencing.

Species Nb PRA-hsp65 result
M. avium (18)c 1 M. kansasii 1
M. farcinogenes (1) 1 M. scrofulaceum 1
M. intracellulare (9) 1 M. avium 3
M. kansasii (7) 1 M. avium 2
1 M. gastri 1
M. mucogenicum (8) 1 M. chitae 1
1 M. gordonae 1
1 M. nonchromogenicum 1
M. nebraskense (1) 1 M. avium 3
M. scrofulaceum (3) 2 M. lentiflavum 3
1 M. simiae 1

a Species identification was determined by hsp65 sequencing for 113 isolates that had discordant results by PRA-hsp65 and phenotypic studies. For 71 isolates sequencing confirmed the species identification obtained by PRA-hsp65. For an additional 30 isolates, the PRA-hsp65 patterns obtained were previously unreported (see Table 4).

b N, number of isolates for which the PRA-hsp65 identification shown was incorrect.

c Total number of isolates of that species sequenced.