Table 2.

Mycobacterium avium large sequence polymorphisms. Genomotypes from the present study that lack the indicated sequences are listed. Supporting evidence from previous studies is provided and includes the designations used to describe individual polymorphisms. ID numbers correspond to Figure 4.

Number	ORF start	ORF end	Present study	Tizard 1998	Dohmann 2003	Paustian 2005	Semret 2005	Marsh 2005	Marsh 2006	Talaat 2006	Semret 2006
	MAP0072c	MAP0076	HOM (5835cc, 5836cc)
1	MAP0092	MAP0108	HOM, AV-SI			MAP_RD1	LSPP1			MAP-1
2	MAP0282c	MAP0284c	HOM, AV-SI				LSPP2			MAP-2
3	MAP0387	MAP0389	HOM, AV-SI				LSPP3			MAP-3
4	MAP0746	MAP0766c	AV-SI (6007, 6049)
5	MAP0850c	MAP0866	HOM, AV-SI		RDA I130	MAP_RD2	LSPP4			MAP-4
6	MAP0956	MAP0967	HOM				LSPP5			MAP-5
7	MAP1230	MAP1237c	HOM	GS			LSPP6			MAP-6
8	MAP1344	MAP1349c	HOM, AV-SI				LSPP7			MAP-7
9	MAP1376c	MAP1381	AV-SI
10	MAP1424c	MAP1465	AV-SI (6007, 6049, 6058, ATCC49884)
11	MAP1432	MAP1438c	MAP Sheep
12	MAP1485c	MAP1491	MAP Sheep						S 1		LSPA20
13	MAP1631c	MAP1638c	HOM				LSPP8			MAP-8
14	MAP1718c	MAP1727	HOM		RDA III10		LSPP9			MAP-9
15	MAP1721c	MAP1723	HOM, AV-SI
16	MAP1728c	MAP1744	MAP Sheep					RDA3	S 2
17	MAP1729c	MAP1732c	AV-SI				LSPP9			MAP-10
18	MAP2026	MAP2029c	HOM				LSPP10			MAP-11
19	MAP2148	MAP2158	HOM, AV-SI			MAP_RD3	LSPP11			MAP-12
20	MAP2178	MAP2196	HOM, AV-SI			MAP_RD4	LSPP12			MAP-13
21	MAP2325	MAP2325							S 3
22	MAP2372	MAP2375c	AV-SI (5001, 6006, 6058, ATCC49884)
	MAP2523c	MAP2532	HOM (5835cc, 5836cc)
23	MAP2751	MAP2769c	HOM, AV-SI			MAP_RD5	LSPP13			MAP-14
24	MAP2963c	MAP2965c	HOM, AV-SI			Unnamed				MAP-15
25	MAP3067c	MAP3079c	AV-SI (5001, 6006, 6058, ATCC49884)
26	MAP3721	MAP3776c	HOM, AV-SI			MAP_RD6	LSPP14/15			MAP-16
27	MAP3814	MAP3818	HOM		RDA II60	MAP_RD7	LSPP16
28	MAP4266	MAP4270	HOM, AV-SI				LSPP17			MAP-17	MAA, MAS
29	MAP4326c	MAP4328c	HOM							MAP-18