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. 2008 Apr;178(4):2113–2121. doi: 10.1534/genetics.107.081927

Primers used in the microsatellite survey

Locus Repeat Forward primer 5′-3′/reverse primer 5′-3′
C. elegans dimers
C18F3 (GT)14 AAGGGCATGAGGAGAAGTCAACGGGAGCAGCTCTCGTTCTGATTGC
F10C2 (GT)26 GCTCCACTTTTCAACATCCTTCCTTGTCCCCGCTATTTCGCTC
F32B5 (GT)34 GCACTTTTCCAACAAAAAAATCCGCCCACACGAGACATGCAATAACTACC
W01A6 (GA)45 CCCCCGAATCTCATTTCAGTTGTTAGCACCCTTCCGTTTTCACGCC
F59D12 (GT)59 ACCCCAATGGACTACGTTGTGCACGTGACGCCTTTGGTTCATAG
F16A11 (GT)68 CTTCTTCTTCTTCCTCCGACCGCAGAGGGGGTGATCTTTATGCC
F09F3 (GT)107 GCAATCCTACGGTACACCCATACCCGTATTTTGACATTAGGCAGGTGC
K06G5 (GT)142 AGCTTGAGGAAGAAGGTGGGGTGTTCGTCCATTTGAGCACC
T08H4 (GT)191 TGGCTCATCACTTGTGTTCAACCCGGCTCCTCTCTGATTTGTCTG
C. elegans trimers
C27D9 (AAT)12 AATCGTCGTCGGAACTCAGATAAGGCAAGTGTTGAGGCAAACAGAAG
K08D12 (ACC)12 GAACGTGCATCAAGTGTAATTCGCTGGCACCCGATATGTGTGAAG
E02A10 (GGA)13 GTAGCAAGAGCCGAAAGCTGAGTGTCAAGCCTACACCACCACTAGC
F47B8 (GGA)13 GCTCCTCCAGAATATCCAGCTTCCTATGGTCTGCTCGATCAGTTGTG
C24A3 (TTC)13 CGCATCTTCTTTTCGGAGCAAGTCATCCTCCTTCCAACACTGCC
R01E6 (TTC)14 TCCCCTCGTAATTCCCAAAATCCCAAAAGGAGATGCAGAAGAGTAGG
F10E7 (CAA)15 ACCAAAGTCAACCCGACTACAGCTCGAGTGTGATGCGAACAGTTG
C03H5 (AAT)28 AACAAAAATGTGGCAGGGAGGGGTTACGGTAGTGGTACTGTAGG
F35H10 (GTA)30 CGCTCAGAACCATGTTTAAGATTTCCTTTTATGAGTAACTTTGGTGCAGG
C. elegans tetramers
C03B1 (ATGG)17 GAATCTGTTCTTCCTTCCTTCGCCGTTCTCCTTTTATCATCAAC
C16C8 (TAGG)19 TCCTGCCTACCTGCCCATTAGGGCGTGCAGACATAAGATAGG
C43B7 (TAGG)26 GATGCAGACAAAAATACCGAGAGGGACTAATCACCCACAAACCGAAAC
C13B7 (TAGG)28 CAAAGTTAGCAAGAACCCAGTTGGTCGCACCTACCTACACCCTTTCTG
B0564 (AAAT)43 GACCATTAGATGAATTTCCCGAGCAACAGAATTTTTAC
D. pulex dimers
P17D02 (GA)13 CCGAATGTCTAACCCACACCTGCACATATTGCCCGTGTAT
P17C11 (GT)15 ACGGTAGCGGTATTGGAAGATGCAGCGATTCAAATAATGG
P17C09 (GA)15 GTATGGGCCGGCTAAGGATAGGAATTTGGCGCATCGAG
P17C08 (GA)16 CCGTCTCCAACCAATTCACTTAAACTTCGGGGACCTTGTG
P17B12 (GA)19 TCCCGGTTTATCACAGTTCCGCAAAAATCGCAGGTTTCTC
P17B11 (GA)20 TAACAAGTGGCTGCATCCTGCAGAGGAGGTAACGCAAAGG
P17A09 (GA)26 CGTCCATCATGACTTGGATCTCACCATGAGTGAAAGCCAGA
P17A07 (GT)27 AGAGTGAAGGCAGGAAACCACGGAGACGACCAAGGTGTA
P17A02 (GA)30 TTATTCATGTACGCCCGTTGGCAGTGCTGTCCTGTGAGAC
P17A01 (GA)30 TCATGTACGCCCGTTGTAAAGCCATGGACGTGACGTATAA
P16H07 (GA)34 GCACGTGACACATTTGAAGCGTTCAGCACGAAAATGACGA
P16H05 (GA)34 AGCCGTACCTGTGATGTGTGACGAGCAATACACGATGACG
P16H03 (GA)34 TGAACGAGGGGAAAATCAAAAACCTGCTCTTCACGACGAC
P16G10 (GA)35 CTGAGAGCGAGACCGACAGCGACATGGATGATGTTGAGG
P16F10 (GA)36 GGTGTATCATTTTTGATTGAATTTTCTAGTCGCATTTGCGCCTTT
P16F02 (GA)37 AGTCTGGAGAGCCAAAGCAGCTCGTCGACCATGAGAACAA
P16F01 (GA)38 ATTCGAACCGACGGAAAACTCAACGGCAGTGGCAATACTA
P16E08 (GA)38 CAACGGATGGTGGAATAACCTCCGCGTAGCCTCATAGAAT
P16E09 (GA)38 CTCGGGAAGGTTTCAGACAGACCCAAAAGAGCGAGGAACT
P16C05 (GA)44 GATTCGAACCACCCAACTGTGTGGGGTACTCAGCGAAAGA
P16C06 (GA)44 CCGAGAGCTTCTCACTGCTTACGAAATCGATCCCTCTTCC
P16B10 (GA)47 CAAGTGGGCGTGTACAACAGTGTCAGCGCGTCTAGAGAAA