TABLE 1.
Consensus genetic map of the five RIL populations
| Genetic position (cM)
|
|||||||
|---|---|---|---|---|---|---|---|
| Marker | Type | Physical position (Mb) | BlhCol | BurCol | CtCol | CviCol | ShaCol |
| c1_00593 | 0.6 | 0.0 | 0.0 | 0.0 (−) | 0.0 (−) | 0.0 | |
| c1_02212 | 2.2 | 5.4 (+) | 7.3 | 5.8 (−) | 4.5 | ||
| c1_02992 | 3.0 | 8.1 | 6.3 (+) | 10.2 | 10.7 (−) | 7.2 | |
| c1_04176 | 4.2 | 10.7 | 8.3 (+) | 15.4 | 17.7 (−) | 11.7 | |
| c1_05593 | 5.6 | 13.4 | 12.4 (+) | 21.8 | 24.4 (−) | 15.2 | |
| c1_08385 | 8.4 | 25.7 | 17.8 (+) | 31.6 | 37.3 | 27.9 | |
| c1_09621 | M | 9.6 | 29.2 | ||||
| c1_09782 | 9.8 | 23.7 (+) | 36.7 | 41.6 | 31.9 | ||
| c1_11160 | 11.2 | 28.9 (+) | 45.0 | 48.9 | |||
| c1_11723 | M | 11.7 | 39.3 | ||||
| c1_12295 | 12.3 | 34.6 (+) | 48.1 | 54.2 | 43.2 | ||
| c1_13869 | 13.9 | 50.1 | 42.0 (+) | 55.4 | 64.5 | 49.1 | |
| c1_13926 | 13.9 | 64.5 | |||||
| c1_15634 | 15.6 | 50.3 | 42.2 (+) | 65.4 | 49.4 | ||
| c1_15927 | M | 15.9 | 50.5 | ||||
| c1_16875 | 16.9 | 55.5 (+) | 50.8 (+) | 61.3 | 71.7 | 51.2 | |
| c1_18433 | 18.4 | 63.1 (+) | 62.5 | 69.2 | 82.0 | 59.3 | |
| c1_19478 | 19.5 | 72.0 | 85.6 | 61.5 (−) | |||
| c1_20384 | 20.4 | 69.2 (+) | 68.0 | 73.9 | 89.0 | 65.7 (−) | |
| c1_22181 | 22.2 | 72.9 (+) | 70.5 (−) | 92.3 | 70.3 (−) | ||
| c1_23381 | 23.4 | 77.5 (+) | 74.3 (−) | 82.9 | 97.0 | 73.2 (−) | |
| c1_24795 | 24.8 | 83.7 (+) | 81.8 (−) | 89.3 | 105.9 | 79.7 (−) | |
| c1_25698 | 25.7 | 88.7 (+) | 84.6 (−) | 92.9 | 111.7 | 83.1 (−) | |
| c1_26993 | 27.0 | 90.3 | 102.2 | 122.6 (−) | 87.7 | ||
| c1_28454 | 28.5 | 97.0 (+) | 94.4 | 104.9 | 129.4 (−) | 91.5 | |
| c1_28667 | 28.7 | 94.7 | 105.6 | 130.4 | |||
| c1_29898 | 29.9 | 104.0 (+) | 99.4 | 112.7 | 137.9 | 96.4 | |
| c2_00593 | 0.6 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
| c2_02365 | 2.4 | 11.9 | 5.2 (+) | 7.6 | 13.8 | 7.2 (+) | |
| c2_03041 | 3.0 | 7.9 | 16.9 | 7.7 (+) | |||
| c2_04263 | 4.3 | 12.6 | 5.6 (+) | 17.7 | 7.7 (+) | ||
| c2_05588 | 5.6 | 6.6 (+) | 9.8 | 8.3 (+) | |||
| c2_06280 | I | 6.3 | 25.9 | ||||
| c2_06655 | 6.7 | 17.4 | 9.3 (+) | 15.0 | 12.2 (+) | ||
| c2_07650 | 7.7 | 23.3 | 13.0 | 22.4 | 34.6 | 19.3 (+) | |
| c2_10250 | 10.3 | 33.6 | 24.2 | 37.9 | 44.4 | 30.7 (+) | |
| c2_11457 | 11.5 | 37.1 | 28.5 | 42.2 | 48.8 | 35.1 (+) | |
| c2_12435 | 12.4 | 43.6 | 33.7 | 47.7 | 54.7 | 41.5 (+) | |
| c2_13472 | 13.5 | 47.7 | 38.3 | 61.6 | 45.0 (+) | ||
| c2_15252 | 15.3 | 52.3 | 43.8 | 60.9 | 68.5 | 48.5 (+) | |
| c2_16837 | 16.8 | 58.5 | 49.7 | 65.5 | 77.2 | 54.4 (+) | |
| c2_17606 | 17.6 | 51.2 | 66.9 | 79.9 | 56.7 (+) | ||
| c2_18753 | 18.8 | 66.7 | 55.8 | 70.8 | 86.7 | 61.4 (+) | |
| c3_00580 | 0.6 | 0.0 | 0.0 (+) | 0.0 (−) | |||
| c3_00885 | 0.9 | 0.0 | 0.0 | 1.1 (+) | 0.9 (−) | ||
| c3_01901 | 1.9 | 3.0 | 3.7 | 4.5 (+) | 3.8 (−) | ||
| c3_02133 | M | 2.1 | 6.0 | ||||
| c3_02968 | 3.0 | 6.8 | 5.7 | 8.3 (+) | 5.9 (−) | ||
| c3_04141 | 4.1 | 10.4 | 8.0 | 11.8 | 14.6 (+) | 5.9 (−) | |
| c3_05141 | 5.1 | 13.8 | 11.1 | 15.8 | 18.7 (+) | 5.9 (−) | |
| c3_06631 | 6.6 | 14.5 | 19.6 | 24.0 (+) | 9.4 (−) | ||
| c3_07673 | M | 7.7 | 21.9 | ||||
| c3_08042 | 8.0 | 19.3 | 25.9 | 30.2 (+) | 12.9 (−) | ||
| c3_09056 | M | 9.1 | 32.4 | ||||
| c3_09748 | 9.7 | 28.7 | 35.0 | 39.9 (+) | 24.7 | ||
| c3_10996 | 11.0 | 34.2 | 48.4 (+) | ||||
| c3_11192 | 11.2 | 49.8 (+) | 35.5 | ||||
| c3_11208 | M | 11.2 | 43.0 | ||||
| c3_12647 | 12.6 | 46.4 (+) | 40.9 | 48.6 | 55.7 | 38.7 | |
| c3_14097 | 14.1 | 46.6 (+) | 41.2 | 48.6 | 38.7 | ||
| c3_15117 | 15.1 | 47.7 (+) | 42.0 | 48.9 | 57.6 | ||
| c3_15714 | M | 15.7 | 41.0 | ||||
| c3_16677 | 16.7 | 50.0 | 57.3 (−) | 68.4 | |||
| c3_17283 | M | 17.3 | 48.9 | ||||
| c3_17651 | M | 17.7 | 55.1 | ||||
| c3_18180 | 18.2 | 54.2 | 63.6 (−) | 75.6 | 51.8 | ||
| c3_20729 | 20.7 | 67.5 | 63.4 | 70.9 (−) | 85.9 | 63.4 (+) | |
| c3_22147 | 22.1 | 70.2 | 65.5 | 74.2 | 90.3 | 67.7 (+) | |
| c4_00012 | 0.0 | 0.0 | 0.0 | 0.0 | |||
| c4_00269 | I | 0.3 | 0.0 | ||||
| c4_00641 | 0.6 | 0.0 | 4.1 | 6.3 | 7.0 | ||
| c4_02133 | 2.1 | 11.3 | 6.9 | 12.4 | 16.2 | 15.6 | |
| c4_03833 | 3.8 | 11.5 | 7.0 | 12.5 | 16.4 | 15.6 | |
| c4_04877 | 4.9 | 11.7 | 7.3 | 12.5 | 18.9 | 15.9 | |
| c4_05629 | M | 5.6 | 13.3 | ||||
| c4_05850 | 5.9 | 19.2 | 20.1 | 28.4 | 22.2 | ||
| c4_06923 | 6.9 | 26.7 | 22.6 | 28.1 | 35.8 | 27.7 | |
| c4_07549 | M | 7.5 | 31.3 | 25.6 | 31.3 | 39.3 | 30.8 |
| c4_07740 | 7.7 | 26.4 | 31.6 | 39.8 | |||
| c4_08930 | 8.9 | 38.6 | 30.9 (+) | 36.7 | 43.7 | 35.5 | |
| c4_10609 | 10.6 | 35.7 (+) | 46.0 | 51.1 | 42.4 | ||
| c4_11878 | 11.9 | 51.6 | 38.7 (+) | 52.2 | 56.6 | 47.9 | |
| c4_13171 | 13.2 | 56.1 (+) | 40.9 (+) | 56.8 | 62.5 | 55.1 (−) | |
| c4_14819 | 14.8 | 60.9 | 44.2 (+) | 62.6 | 68.6 | 59.4 | |
| c4_15765 | 15.8 | 46.4 (+) | 64.9 | 71.9 | 60.8 | ||
| c4_17684 | 17.7 | 68.8 | 52.7 (+) | 73.7 | 80.9 | ||
| c4_18056 | 18.1 | 68.3 | |||||
| c5_00576 | 0.6 | 0.0 | 0.0 (−) | 0.0 (−) | 0.0 (+) | 0.0 | |
| c5_01587 | 1.6 | 7.0 | 4.6 (−) | 4.5 | 5.4 (+) | 6.4 | |
| c5_02900 | 2.9 | 11.0 | 6.1 (−) | 8.9 (−) | 12.1 (+) | 9.0 (−) | |
| c5_04011 | 4.0 | 15.6 | 9.1 (−) | 13.3 (−) | 17.9 (+) | 11.8 | |
| c5_05319 | 5.3 | 19.1 | 11.5 (−) | 17.4 | 22.6 (+) | 17.2 | |
| c5_06820 | 6.8 | 25.5 | 18.9 (−) | 23.9 | 28.4 (+) | 21.7 | |
| c5_07442 | 7.4 | 20.4 (−) | 27.6 | 31.5 (+) | 24.9 | ||
| c5_08563 | 8.6 | 33.3 | 25.1 | 32.1 | 35.2 (+) | ||
| c5_09082 | M | 9.1 | 36.1 | ||||
| c5_10428 | 10.4 | 45.7 | 33.7 | 46.1 | 48.1 | 41.7 | |
| c5_12699 | 12.7 | 35.4 | 47.4 | ||||
| c5_13614 | 13.6 | 49.0 | 36.4 | 48.2 | 53.1 | 43.1 | |
| c5_14766 | 14.8 | 54.8 | 42.0 | 53.0 | 58.3 | ||
| c5_16368 | 16.4 | 60.5 | 53.0 | ||||
| c5_17570 | 17.6 | 64.4 | 53.3 | 64.5 | 70.0 | ||
| c5_19316 | 19.3 | 73.2 | 62.6 | 68.8 | 77.5 | 62.1 (+) | |
| c5_20318 | 20.3 | 77.1 | 64.2 | 71.4 | 81.4 | 63.6 (+) | |
| c5_21319 | 21.3 | 82.8 | 68.5 | 75.4 | 84.9 | 66.1 (+) | |
| c5_22415 | 22.4 | 85.9 | 73.2 | 80.3 | 91.4 | 72.5 (+) | |
| c5_23116 | 23.1 | 87.5 | 75.4 | 82.5 | 96.3 | 74.7 (+) | |
| c5_24997 | 25.0 | 95.1 | 80.4 | 88.1 | 106.3 | 80.9 (+) | |
| c5_26671 | 26.7 | 101.0 | 89.6 | 98.1 (−) | 112.6 | 87.3 (+) | |
Each marker name includes the chromosome number followed by the physical position in kilobases of the marker on the chromosome (Col-0 genomic sequence). “M” indicates a microsatellite marker; “I” indicates an indel marker. Other markers are SNPs. Markers showing a significant segregation distortion between the parental alleles are indicated by (+) when there is an excess of Col-0 allele and by (−) when there is a lack of Col-0 allele relative to the other parent allele.