TABLE 3.

Average value of summary statistics for forward simulations with and without selfing

					FORWSIMe		msf
2Na	Generations	ub	rc	sd	E[S]g	E[H]h	E[S]	E[H]
1,000	10,000	0.0100	0.0100	0.00	71.250	16.066	71.016	15.916
1,000	20,000	0.0182	0.1000	0.90	70.687	15.968	71.016	15.916
1,000	20,000	0.0196	0.5000	0.98	70.804	15.586	71.016	15.916
1,000	10,000	0.1000	0.1000	0.00	708.614	19.612	706.603	19.538
1,000	20,000	0.1333	0.2000	0.50	711.662	19.563	706.603	19.538

^aTotal number of chromosomes under the standard neutral Wright–Fisher model with constant population size and uniform mutation and recombination rates.

^bPer-generation per-sequence mutation rate.

^cPer-generation per-sequence recombination rate.

^dProbability of selfing.

^eFORWSIM is our forward simulation program written in C++ and is freely available at http://people.cornell.edu/pages/bp85.

^fms is a C program that simulates data sets under the coalescent framework and is freely available at http://home.uchicago.edu/∼rhudson1/source.html. ms was run with the population crossing-over rate ρ = 4Nr and population mutation rate θ = 4Nu.

^gTotal number of SNPs for a sample size of 20 chromosomes. Average values are based on 1000 simulations.

^hNumber of distinct haplotypes. Average values are based on a sample of 20 chromosomes and 1000 simulations.