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Number of times the native structure is ranked first among all models in the different test sets (number of times)/(total number of targets in the set)
| Method | LB-2 | LB-4 | 4state_reduced | LMDS | Lattice_ssfit | Structal | Total |
| ProQ-LG | 146/180 | 91/106 | 5/7 | 4/10 | 8/8 | 55/90 | 309/401 |
| ProQ-MX | 121/180 | 71/106 | 6/7 | 3/10 | 7/8 | 44/90 | 252/401 |
| Errat | 143/180 | 93/106 | 1/7 | 5/10 | 3/8 | 61/90 | 306/401 |
| Prosa II | 143/180 | 93/106 | 5/7 | 6/10 | 8/8 | 40/90 | 295/401 |
| Verify3D | 142/180 | 89/106 | 4/7 | 2/10 | 7/8 | 24/90 | 268/401 |
