Table 3.

Fishing new globular, inner, and outer membrane proteins in the E. coli KI2 genome with Hunter

New globular proteins	1099
New inner membrane proteins	136
New outer membrane proteins	18

EcoGene code	Swiss-Prot code	Length	No. of predicted TM strands	No. of homologs in Swiss-Prot	Annotation of homologs (first homolog, % identity of local and global alignments)
a Outer membrane proteins in K-islands (Perna et al. 2001).
EG13412	CSGF_ECOLI	138	2	1	Biogenesis of curli organelles (CSGF_SALTY: 90%; 90%)
EG12668	UIDC_ECOLI	416	18	0
EG11307	YDBA_ECOLI	2003	38	2	Hypothetical protein (YHFJ_ECOLI: 38%; 38%)
EG12269	YHJY_ECOLI	232	10	1	Lipase 1 (LIP1_PHOLU: 27%; 11%)
EG12513	YTFM_ECOLI	577	12	1	Hypothetical protein (YTFM_HAEIN: 43%; 42%)
EG12562	YJHT_ECOLI	368	14	5	Hypothetical protein (YJHT_HAEIN: 43%; 42%)
EG12850	YFAL_ECOLI	1250	16	2	Pertactin precursor (PERT_BORBR: 25%; 15%)
EG13297a	YAIO_ECOLI	257	14	0
EG13480	YLII_ECOLI	371	2	3	Glucose dehydrogenase (DHGB_ACICA: 32%; 22%)
EG13563	YAGX_ECOLI	841	14	1	Fimbrial subunit C (CFAC_ECOLI: 25%; 20%)
EG13605	YAIT_ECOLI	486	28	5	Pertactin precursor (PERT_BORBR: 33%; 14%)
EG13783	—	96	4	24	Outer membrane porin C (OMPC_KLEPN: 60%; 15%)
EG13889	—	882	12	2	Adhesin aidA-I precursor (AIDA_ECOLI: 29%; 23%)
EG13984	YDIY_ECOLI	252	12	0
EG14088	YFAZ_ECOLI	180	8	0
EG11743	YDDB_ECOLI	790	24	1	Hypothetical protein (YDDB_HAEIN: 24%; 22%)
EG13160a	YFEN_ECOLI	254	12	0
EG13565	YAGZ_ECOLI	195	2	0