Table 6.

List of organisms used for the genome search

Organism	# Sequences in genome	Genbank file
Agrobacterium tumefaciens str. C58 (U. Washington)	5402	AE008688 (circular chromosome) AE008689 (linear chromosome) AE008687 (plasmid AT) AE008690 (plasmid TI)
Bacillus subtilis	4112	NC_000964
Borrelia burgdorferi w/plasmids	1596	NC_001318 (chromosome) Plasmids: NC_001904 (cp9), NC_001903 (cp26), NC_000948 (cp32-1), NC_000949 (cp32-3), NC_000950 (cp32-4), NC_000951 (cp32-6), NC_000952 (cp32-7), NC_000953 (cp32-8), NC_000954 (cp32-9), NC_000957 (lp5), NC_001849 (lp17), NC_000955 (lp21), NC_001850 (lp25), NC_001851 (lp28-1), NC_001852 (lp28-2), NC_001853 (lp28-3), NC_001854 (lp28-4), NC_001855 (lp36), NC_001856 (lp38), NC_001857 (lp54), NC_000956 (lp56)
Campylocater jejuni	1634	AL111168
Escherichia coli K12	4279	NC_000913
Haemophilus influenzae Rd	1714	NC_000907
Helicobacter pylori 26695	1576	NC_000915
Neisseria meningitidis serogroup A strain Z2491	2065	AL157959
Pseudomonas aeruginosa	5567	NC_002516
Salmonella enterica subsp. enterica serovar Typhi	4600	NC_003198
Salmonella typhimurium LT2	4451	NC_003197
Treponema pallidum	1036	NC_000919
Vibrio cholerae	3828	AE003852 (chromosome I) AE003853 (chromosome II)