Table 2.
The phylogenetic group of 16S rRNA gene sequencing of excised DGGE bands and the presence and absence at each samples.
| DGGE band | Band name | Accession number | Phylogenetic groupa | ST01 | ST02 | ST03 | ST04 | ST05 | ST06 | ST07 |
|---|---|---|---|---|---|---|---|---|---|---|
| Alphaproteobacteria | ||||||||||
| 18 | KH03–30B | AB307981 | uncultured | B | B | B | B | B | T/B | T/B |
| 7 | KH03–9B | AB307970 | Rodobacterales | T/B | T/B | T/B | T/B | T/B | – | – |
| 9 | KH03–7B | AB307969 | Rodobacterales | T/B | T/B | T/B | T/B | T/B | T/B | T/B |
| 20 | KH03–34B | AB307984 | Rodobacterales | – | – | – | – | B | B | T/B |
| 29 | KH03–57B | AB307994 | Rodobacterales | T | T | – | T | T | T/B | T/B |
| Betaproteobacteria | ||||||||||
| 8 | KH03–11B | AB307971 | Burkholderiales | T/B | T/B | T/B | T/B | T/B | B | B |
| Gammaproteobacteria | ||||||||||
| 5 | KH03-40 | AB307996 | Alteromonadales | T | – | – | – | – | – | – |
| 19 | KH03–33B | AB307983 | Alteromonadales | – | – | – | – | T/B | T/B | T/B |
| 31 | KH03–51B | AB307991 | Alteromonadales | – | – | – | – | – | – | B |
| 32 | KH03–52B | AB307992 | Alteromonadales | – | – | – | – | – | B | B |
| 16 | KH03–22B | AB307978 | Vibrionales | – | – | – | – | – | B | B |
| CFB group | ||||||||||
| 11 | KH03–13B | AB307972 | Flavobacteriales | T/B | T/B | T/B | T/B | T | – | – |
| 23 | KH03–24B | AB307980 | Flavobacteriales | T/B | – | – | T/B | T/B | B | B |
| 24 | KH03–32B | AB307982 | Flavobacteriales | T/B | T/B | T/B | T/B | – | T | T |
| 25 | KH03–38B | AB307987 | Flavobacteriales | T/B | T/B | T/B | T/B | – | – | – |
| 26 | KH03–42B | AB307988 | uncultured | T/B | T/B | B | B | T/B | B | – |
| Gram-positive bacteria | ||||||||||
| 12 | KH03–17B | AB307975 | Lactobacillales | – | – | – | – | B | B | B |
| 13 | KH03–18B | AB307976 | Lactobacillales | – | – | – | – | B | T/B | T/B |
| 30 | KH03–47B | AB307990 | Actinobacteria | – | – | – | – | – | T/B | B |
| 17 | KH03–23B | AB307979 | Actinobacteria | – | – | – | – | – | B | – |
| 27 | KH03–46B | AB307989 | Actinobacteria | – | – | – | – | – | B | – |
| 28 | KH03–56B | AB307993 | uncultured | – | – | – | – | – | – | B |
| Cyanobacteria and chlroplasts | ||||||||||
| 1, 10 | KH03–77, 15B | AB307999, AB307973 | Chroococcales | T | T | T/B | T/B | T | – | – |
| 2, 14 | KH03–78, 21B | AB308000, AB307977 | Chroococcales | – | – | – | – | T/B | – | – |
| 3, 21 | KH03–71, 37B | AB307997, AB307986 | Prochlorales | – | – | – | – | – | T/B | T/B |
| 4, 22 | KH03–73, 35B | AB307998, AB307985 | Prochlorales | – | – | – | – | – | T/B | T/B |
| 15 | KH03–16B | AB307974 | Plastid | – | – | – | – | B | T/B | T/B |
| 6 | KH03–36 | AB307995 | Plastid | T | T | T | T | T | T | – |
a
Class or Order of the closest isolates. The band matched to no isolates with > 95% similarity represented as ‘uncultured’ for convenience.
T, presence of DGGE band in total communities (T0 and T10); B, in BrdU-incorporated comminities (T5b and T10b); T/B, in both communities; –, DGGE band was not detectable.