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. 2008 Apr 1;10(4):1007–1017. doi: 10.1111/j.1462-2920.2007.01521.x

Table 2.

The phylogenetic group of 16S rRNA gene sequencing of excised DGGE bands and the presence and absence at each samples.

DGGE band Band name Accession number Phylogenetic groupa ST01 ST02 ST03 ST04 ST05 ST06 ST07
Alphaproteobacteria
 18 KH03–30B AB307981 uncultured B B B B B T/B T/B
 7 KH03–9B AB307970 Rodobacterales T/B T/B T/B T/B T/B
 9 KH03–7B AB307969 Rodobacterales T/B T/B T/B T/B T/B T/B T/B
 20 KH03–34B AB307984 Rodobacterales B B T/B
 29 KH03–57B AB307994 Rodobacterales T T T T T/B T/B
Betaproteobacteria
 8 KH03–11B AB307971 Burkholderiales T/B T/B T/B T/B T/B B B
Gammaproteobacteria
 5 KH03-40 AB307996 Alteromonadales T
 19 KH03–33B AB307983 Alteromonadales T/B T/B T/B
 31 KH03–51B AB307991 Alteromonadales B
 32 KH03–52B AB307992 Alteromonadales B B
 16 KH03–22B AB307978 Vibrionales B B
CFB group
 11 KH03–13B AB307972 Flavobacteriales T/B T/B T/B T/B T
 23 KH03–24B AB307980 Flavobacteriales T/B T/B T/B B B
 24 KH03–32B AB307982 Flavobacteriales T/B T/B T/B T/B T T
 25 KH03–38B AB307987 Flavobacteriales T/B T/B T/B T/B
 26 KH03–42B AB307988 uncultured T/B T/B B B T/B B
Gram-positive bacteria
 12 KH03–17B AB307975 Lactobacillales B B B
 13 KH03–18B AB307976 Lactobacillales B T/B T/B
 30 KH03–47B AB307990 Actinobacteria T/B B
 17 KH03–23B AB307979 Actinobacteria B
 27 KH03–46B AB307989 Actinobacteria B
 28 KH03–56B AB307993 uncultured B
Cyanobacteria and chlroplasts
 1, 10 KH03–77, 15B AB307999, AB307973 Chroococcales T T T/B T/B T
 2, 14 KH03–78, 21B AB308000, AB307977 Chroococcales T/B
 3, 21 KH03–71, 37B AB307997, AB307986 Prochlorales T/B T/B
 4, 22 KH03–73, 35B AB307998, AB307985 Prochlorales T/B T/B
 15 KH03–16B AB307974 Plastid B T/B T/B
 6 KH03–36 AB307995 Plastid T T T T T T
a

Class or Order of the closest isolates. The band matched to no isolates with > 95% similarity represented as ‘uncultured’ for convenience.

T, presence of DGGE band in total communities (T0 and T10); B, in BrdU-incorporated comminities (T5b and T10b); T/B, in both communities; –, DGGE band was not detectable.