Table 1.
Summary of the starting data set, with organisms ordered by number of identified interactions
| Organism name | Abbreviated Name | Accession Number | Interactions | Regulons | TUs |
| Escherichia coli K12 | Eco | [GenBank: NC_000913] | 2118 | 87 | 938 |
| Salmonella typhimurium LT2 | Stm | [GenBank: NC_003197] | 1901 | 69 | 832 |
| Salmonella typhi CT18 | Sty | [GenBank: NC_003198] | 1871 | 68 | 812 |
| Shigella flexneri 2a 301 | Sfle | [GenBank: NC_004337] | 1465 | 62 | 718 |
| Escherichia coli O157H7 | Ecoo | [GenBank: NC_002655] | 862 | 46 | 411 |
| Yersinia pestis KIM | Ypes | [GenBank: NC_004088] | 740 | 28 | 405 |
| Shigella flexneri 2a 2457T | Sfl2 | [GenBank: NC_004741] | 725 | 47 | 367 |
| Shewanella oneidensis MR-1 | Sone | [GenBank: NC_004347] | 573 | 20 | 345 |
| Vibrio cholerae N16961 | Vcho | [GenBank: NC_002505, GenBank: NC_002506] | 506 | 22 | 267 |
| Haemophilus influenzae Rd KW20 | Hinf | [GenBank: NC_000907] | 350 | 19 | 193 |
| Vibrio parahaemolyticus RIMD 2210633 | Vpar | [GenBank: NC_004603, GenBank: NC_004605] | 305 | 29 | 182 |
| Yersinia pseudotuberculosis IP32953 | Ypse | [GenBank: NC_006155] | 297 | 26 | 185 |
| Erwinia carotovora SCRI1043 | Ecar | [GenBank: NC_004547] | 295 | 7 | 18 |
| Yersinia pestis Mediaevails 91001 | Ypem | [GenBank: NC_005810] | 292 | 25 | 183 |
| Photorhabdus luminescens TT01 | Plum | [GenBank: NC_005126] | 256 | 23 | 136 |
| Vibrio vulnificus CMCP6 | Vvul | [GenBank: NC_004459, GenBank: NC_004460] | 256 | 26 | 157 |
| Photobacterium profundum | Ppro | [GenBank: NC_006370, GenBank: NC_006371] | 156 | 21 | 104 |
| Haemophilus ducreyi 35000HP | Hduc | [GenBank: NC_002940] | 106 | 12 | 60 |
| Acinetobacter sp ADP1 | Aadp | [GenBank: NC_005966] | 71 | 9 | 41 |
| Pseudomonas aeruginosa PA01 | Paer | [GenBank: NC_002516] | 42 | 11 | 24 |
| Pseudomonas putida KT2440 | Pput | [GenBank: NC_002947] | 36 | 9 | 17 |
| Pseudomonas syringae DC3000 | Psyr | [GenBank: NC_004578] | 34 | 11 | 18 |
| Buchnera aphidicola Bp | Baph | [GenBank: NC_004545] | 31 | 8 | 22 |
| Legionella pneumophila Paris | Lpnp | [GenBank: NC_006368] | 27 | 8 | 11 |
| Legionella pneumophila Philadelphia | Lpnh | [GenBank: NC_002942] | 20 | 8 | 8 |
| Xylella fastidiosa 9a5c | Xfas | [GenBank: NC_002488] | 18 | 6 | 9 |
| Legionella pneumophila Lens | Lpnl | [GenBank: NC_006369] | 16 | 6 | 9 |
| Xanthomonas campestris ATC 33913 | Xcam | [GenBank: NC_003902] | 8 | 5 | 6 |
| Methylococcus capsulatus Bath | Mcap | [GenBank: NC_002977] | 6 | 3 | 3 |
| Xanthomonas axonopodis 306 | Xaxo | [GenBank: NC_003919] | 6 | 3 | 4 |