Table 1.

Sequence sources and statistics for the three sequential ESTIMA:Songbird assemblies

			ESTIMA:Songbird
			BUILD 1	BUILD 2	BUILD 3
Sequence Source	Raw reads	After filtering	20 K cDNA microarray	Lund/Affy microarray
SB01	2,880	1,840	√	√	√
SB02	18,720	16,360	√	√	√
SB03 (a)	19,104	17,032	√	√	√
SB03 (b)	9,120	5,717		√	√
Duke chromatograms	36,469	23,225		√
Duke from NCBI	17,312	16,442			√
SB05	11,328	10,056			√
SB06	11,040	9,760			√
Rockefeller	9,845	9,764			√
Raw reads			40,704	86,293	99,349
# SEQS INTO PTA			35,232	58,457	86,784
Pure singlets			10,123	11,823	13,908
Clustered singlets			1,900	2,457	3,662
Total singlets			12,023	14,280	17,570
Contigs			5,855	8,348	14,088
Total unique sequences			17,878	22,628	31,658
Total redundant sequences			17,354	35,829	55,126
Redundancy			49%	61%	64%