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. 2008 Mar;20(3):720–738. doi: 10.1105/tpc.107.052043

Table 2.

Oligonucleotide Primer Pairs and Amplicon Sizes Used in Template Preparation for dsRNA Synthesis and Real-Time RT-PCR

Gene Primer Name Primer Sequence (5′–3′) Application Amplicon Size (bp)
Pi CesA1 CesA1T7F GTAATACGACTCACTATAGGGCGTGCCGAAGCTTATCGT dsRNA synthesis 240
CesA1T7R GTAATACGACTCACTATAGGGACAGCGCCAGAGAACACC dsRNA synthesis
CesA1TaqF CTCCATTGCTGTGGGTCTCAT Real-time RT-PCR 90
CesA1TaqR GGCTCAACCTAGATACACCTCCTCTA Real-time RT-PCR
Pi CesA2 CesA2T7F GTAATACGACTCACTATAGGGCTACCGCAGAGCTACCGAAC dsRNA synthesis 195
CesA2T7R GTAATACGACTCACTATAGGGATTCCTGGATGCTCATACGC dsRNA synthesis
CesA2TaqF TGTCGGCGCTGAGCAA Real-time RT-PCR 77
CesA2TaqR GAACGCGTAGGCGAACCA Real-time RT-PCR
Pi CesA3 CesA3T7F GTAATACGACTCACTATAGGGAGATGCCTACACGGGTAACG dsRNA synthesis 206
CesA3T7R GTAATACGACTCACTATAGGGGGTCGACTTCGCTCTCATTC dsRNA synthesis
CesA3TaqF TTCACGCTGCTCTTCAGTCAA Real-time RT-PCR 80
CesA3TaqR ACGTAGTTCCACGGGTTCGT Real-time RT-PCR
Pi CesA4 CesA4T7F GTAATACGACTCACTATAGGGGAGTCTGTGGCTGCTGCTCT dsRNA synthesis 189
CesA4T7R GTAATACGACTCACTATAGGGGATCGGGTACACCGTCAAGT dsRNA synthesis
CesA4TaqF TGGCGCTGGTGCCTAAG Real-time RT-PCR 82
CesA4TaqR CGCAGCACGTCATCGTTATC Real-time RT-PCR
GFP GFPT7F GTAATACGACTCACTATAGGGGCAGATTGCGTGGACAGGT dsRNA synthesis 199
GFPT7R GTAATACGACTCACTATAGGGCTGGAGTACAACTACAACT dsRNA synthesis
ActA ActAF2 CATCAAGGAGAAGCTGACGTACA Real-time RT-PCR 69
ActAR2 GACGACTCGGCGGCAG Real-time RT-PCR