Table 5.
Taxonomic sampling and accession numbers of the four nuclear genes.
| Species | ADRA2B | AR | GHR | vWF | |
|---|---|---|---|---|---|
| EUTHERIA | |||||
| RODENTIA | |||||
| Muridae | Mus musculus | L00979 | NM_013476 | M33324 | AJ238390 |
| Caviidae | Cavia porcellus | AJ271336 | AJ893531 | AF238492 | AJ224663 |
| Sciuridae | Marmota/Sciurus 1 | AJ315942 | AM905334* | AF332032 | J224671 |
| LAGOMORPHA | |||||
| Leporidae | Oryctolagus cuniculus | Y15946 | AJ893533 | AF015252 | U31618 |
| Lepus sp. 2 | AJ427254 | AJ893534 | AF332016 | AJ224669 | |
| Ochotonidae | Ochotona princeps | AJ427253 | AJ893535 | AF332015 | AJ224672 |
| PRIMATES | |||||
| Lemuridae | Eulemur sp.3 | AJ891059 | AJ893537 | AF540627 | AJ891087 |
| Hominidae | Homo sapiens | M34041 | M27423 | X06562 | X06828 |
| SCANDENTIA | Tupaia sp. 4 | AJ251187 | AM905335* | AF540643 | U31624 |
| DERMOPTERA | Cynocephalus variegatus | AJ251182 | AM905340* | AF540625 | U31606 |
| CARNIVORA | |||||
| Canidae | Canis familiaris | AJ891051 | AF197950 | AF133835 | L16903 |
| Felidae | Cryptoprocta ferox | AJ891056 | AJ893549 | AY928733 | AJ891085 |
| PERISSODACTYLA | |||||
| Rhinocerotidae | Ceratotherium/Diceros 5 | AJ251184 | AJ893553 | AM905343* | U31604 |
| Equidae | Equus sp. 6 | Y15945 | AJ893554 | AF392878 | U31610 |
| CETARTIODACTYLA | |||||
| Camelidae | Lama sp. 7 | AJ315941 | AJ893555 | AM905349* | AF108835 |
| Suidae | Sus scrofa | AJ251177 | AF161717 | X54429 | S78431 |
| Physeteridae | Physeter catodon | AJ427417 | AJ893556 | AM905344* | AF108834 |
| CHIROPTERA | Cynopterus/Pteropus 8 | AJ251181 | AM905339* | AF392893 | U31605 |
| EULIPOTYPHLA | Erinaceus/Crocidura 9 | Y12521 | AJ893557 | AF392882 | AY057834 |
| XENARTHRA | Myrmecophaga/Cyclopes 10 | MTR427373 | AJ893558 | AF392875 | MTR278157 |
| SIRENIA | Trichechus/Dugong 11 | AJ251109 | AJ893559 | AF392891 | U31608 |
| PROBOSCIDEA | Elephas maximus | Y12525 | AJ893560 | AF332013 | U31611 |
| HYRACOIDEA | Procavia capensis | Y12523 | AJ893561 | AF392896 | U31619 |
| TUBULIDENTATA | Orycteropus afer | Y12522 | AJ893563 | AF392892 | U31617 |
| MACROSCELIDEA | Macroscelides proboscideus | Y12524 | AM905337* | AF332014 | AY310893 |
| AFROSORICIDA | |||||
| Chrysochloridae | Amblysomus/Chrysospalax 12 | Y12526 | AJ893562 | AF392877 | U97534 |
| Tenrecidae | |||||
| Tenrecinae | Setifer setosus | AJ891077 | AJ893566 | DQ202292 | AJ891098 |
| Echinops telfairi | Y17692 | AJ893565 | AF392889 | AF076478 | |
| Tenrec ecaudatus | AJ251108 | AJ893564 | AF392890 | AF390536 | |
| Hemicentetes semispinosus | AJ891065 | AJ893567 | DQ202288 | AJ891093 | |
| Oryzoryctinae | Oryzorictes hova | AJ891074 | AJ893568 | AF392886 | AJ891097 |
| Microgale talazaci | - | - | AF392885 | - | |
| Microgale brevicaudata | AJ891072 | AJ893569 | AM905345* | AM905350* | |
| Microgale cf. parvula | AM905341* | AM905336* | AM905346* | AM905351* | |
| Limnogale mergulus | AJ891069 | AJ893570 | DQ202289 | AJ891096 | |
| Geogalinae | Geogale aurita | AM905342* | AM905338* | AM905347* | AM905352* |
| Potamogalinae | Micropotamogale lamottei | AJ251107 | AJ893571 | DQ202290 | AF390538 |
| MARSUPIALIA | |||||
| DIDELPHIMORPHIA | Didelphis/Monodelphis 13 | Y15943 | AJ893572 | AF238491 | AF226848 |
| DIPROTODONTIA | Macropus sp. 14 | AJ251183 | AJ893573 | AM905348* | AJ224670 |
1 Sciurus vulgaris (ADRA2B, AR) combined with S. niger (GHR) and Marmota monax (vWF)
2 Lepus crawshayi (ADRA2B, AR, vWF) combined with L. capensis (GHR)
3 Eulemur fulvus fulvus (ADRA2B, AR, vWF) combined with E. coronatus (GHR)
4 Tupaia tana (ADRA2B, AR, GHR) combined with T. glis (VWF)
5 Diceros bicornis (ADRA2B, AR, GHR) combined with Ceratotherium simum (vWF);
6 Equus caballus (ADRA2B, AR, GHR) combined with E. asinus (vWF)
7 Lama pacos (ADRA2B, AR, GHR) combined with L. glama (vWF)
8Cynopterus sphinx (ADRA2B, AR, vWF) combined with Pteropus vampyrus (GHR)
9 Erinaceus europaeus (ADRA2B, AR, GHR) combined with Crocidura russula (vWF)
10 Myrmecophaga tridactyla (ADRA2B, vWF, GHR) combined with Cyclopes didactylus (AR)
11 Trichechus manatus (ADRA2B, AR, GHR) combined with Dugong dugon (vWF)
12 Amblysomus hottentotus (ADRA2B, AR, vWF) combined with Chrysospalax trevelyani (GHR)
13 Didelphis marsupialis (ADRA2B, AR) combined with D. virginiana (vWF) and Monodelphis domestica (GHR)
14 Macropus rufus (ADRA2B, AR, GHR) combined with M. giganteus (vWF)
Upperscore numbers (1–14) refer to taxa for which sequences from different species were combined in the concatenated analysis. * New sequences from the present study. The full alignment is available from Treebase (accession number M3679).