Table 3.
Tight Cluster Results 2
| LymphNode (A2iii in Additional file 1) | OOB error(%) | Number of probes |
| beta_Alanine_metabolism | 16.08 | 42 |
| Alanine_and_aspartate_metabolism | 16.78 | 42 |
| Glutamate_metabolism | 16.08 | 50 |
| Butanoate_metabolism | 16.08 | 59 |
| Propanoate_metabolism | 17.83 | 59 |
| Valine_leucine_and_isoleucine_degradation | 14.69 | 71 |
| Gene Symbols of informative genes in this pathway cluster | ||
| ABAT, ALDH1A3, GLUL, GMPS, HMGCL, HSD17B4, MAP3K15, MCCC2, PDHA1 | ||
| p53 (A3ii in Additional file 1) | ||
| Alanine_and_aspartate_metabolism | 17.53 | 42 |
| Butanoate_metabolism | 15.54 | 59 |
| Propanoate_metabolism | 18.33 | 59 |
| GM-Glycolysis_and_Gluconeogenesis | 23.11 | 66 |
| Valine_leucine_and_isoleucine_degradation | 15.54 | 71 |
| Gene Symbols of informative genes in this pathway cluster | ||
| ABAT, ALDH1A3, HMGCL, HSD17B4, MAP3K15, MCCC2, PDHA1 | ||
| Consort (A1i in Additional file 1) | ||
| Glycosphingolipid_biosynthesis | 23.23 | 34 |
| BC-GATA3_participate_in_activating_the_Th2_cytokine | 14.14 | 43 |
| Butanoate_metabolism | 15.15 | 82 |
| Propanoate_metabolism | 21.21 | 85 |
| Valine_leucine_and_isoleucine_degradation | 17.17 | 25 |
| Gene Symbols of informative genes in this pathway cluster | ||
| ABAT, GATA3, HSD17B4, MCCC2, PRKAR1B | ||
The bold pathways are those with low OOB error rates