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. 2008 Mar 27;8:51. doi: 10.1186/1471-2180-8-51

Table 2.

Promoter sequences for jag, gidB, parA and parB genes of M. bovis BCG (Mb) and M. smegmatis (Ms)

Promoter -35 Spacer -10 Spacer TSS§ Group
P1jag (Mb) aaaCGT 16 CAgCCG 03 A D
P2jag (Mb) aGCgGc 18 CGGCCC 11 G D
P1gidB (Mb) TcGAgA 19 aAacAT 04 C A
P2gidB (Mb) cGCaGT 18 CGgCtG 13 A D
PparA (Mb) TGtgaT 21 tGtCAG 04 G D
P1parB (Mb) gctACA 17 TAcgAT 12 G A
P2parB (Mb) TGCgCa 20 CACCtC 12 G D
Pjag (Ms) cGCCGa 18 CGGGAG 10 G D
PgidB (Ms) TGCgGc 14 CGggAG 07 G D
PparA (Ms) TtCCtT 18 CtCCCG 10 A D
PparB (Ms) TcGaCg 16 CGagCG 04 G D

(†) Length of the spacer between the -35 and -10 hexamers. (‡) Length of the spacer between the -10 hexamer and TSS. (§) Transcription start site (TSS) determined by primer extension. Consensus nucleotides are shown with capital letters.