TABLE 1.
Oligonucleotide designation | Sequence (5′-3′) | Function | Reference |
---|---|---|---|
A | GGCCATGGGAAGAAGGAG | Amplification of ospD and flanking regions | This study |
B | CAATCCTATTACTGCGGG | Amplification of ospD and flanking regions | This study |
C | AGATCTGATGGAAGTAAGGAAGGAAGa | Inverse PCR for construction of suicide vector | This study |
D | AGATCTTATTTATACTCCTTAAATATAATGTCa | Inverse PCR for construction of suicide vector | This study |
E | CACCGTTCATGATAAACAAGAATTATCb | Amplification of ospD for expression in E. coli | This study |
F | AGTATTTAACAAGGCCACAAC | Amplification of ospD for expression in E. coli | This study |
G | AGAAGCGGTTATAAATGCAGTT | ospD forward QPCR primer | This study |
H | TCTGCCATTTGAGCTAAATCAT | ospD reverse QPCR primer | This study |
I | AATTTCATCTGCTGCAGATCAAGTAAAAAGTGc | ospD QPCR probe | This study |
flaB FWD | TCTTTTCTCTGGTGAGGGAGCT | flaB forward QPCR primer | 23 |
flaB REV | TCCTTCCTGTTGAACACCCTCT | flaB reverse QPCR primer | 23 |
flaB PROBE | AAACTGCTCAGGCTGCACCGGTTCc | flaB QPCR probe | 23 |
J | ACGGATTCTAATGCGGTTTTACTT | ospC forward QPCR primer | This study |
K | CAATAGCTTTAGCAGCAATTTCATCT | ospC reverse QPCR primer | This study |
L | CTGTGAAAGAGGTTGAAGCGTTGCTGTCATc | ospC QPCR probe | This study |
M | GATCATGTTCGAGACCTTCA | Tick actin forward QPCR primer | 28 |
N | CGATACCCGTGGTACGA | Tick actin reverse QPCR primer | 28 |
O | CCATCCAGGCCGTGCTCTCc | Tick actin QPCR probe | 28 |
The BglII restriction enzyme sequence is underlined.
Underlined nucleotides were added for directional cloning in the expression vector.
TaqMan probes were labeled at the 5′ end with FAM (6-carboxyfluorescein) and at the 3′ end with TAMRA (6-carboxytetramethylrhodamine).