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. Author manuscript; available in PMC: 2008 Apr 28.
Published in final edited form as: Structure. 2007 Feb;15(2):169–177. doi: 10.1016/j.str.2006.12.006

Table 1.

Prediction quality from 100 lowest-frequency modes using different NMA potentials

  Dota Overlapa Isotropicb
Randomc 0.5 0.3 0
HCA 0.599 (0.199) 0.520 (0.167) 0.617 (0.131)
ANM (16 Å)d 0.556 (0.190) 0.525 (0.172) 0.676 (0.111)
ElN (5 Å)d 0.641 (0.208) 0.583 (0.184) 0.680 (0.128)
DNM (9 Å)d 0.650 (0.209) 0.575 (0.181) 0.655 (0.136)
CHARMM BNM 0.655 (0.211) 0.608 (0.188) 0.658 (0.128)
a

mean and standard deviation of comparisons with ADPs from individual Cα atoms

b

mean and standard deviation for isotropic correlation over 83 entire structures

c

computed for randomly oriented ADPs with anisotropy 0.5.

d

choice of optimal cutoff parameter in parentheses.