Table 1.
ANOVA with response variable stQD.
| Parameters | NJ | MP | ML | SIAa | SIAb |
|---|---|---|---|---|---|
| length | *** | *** | *** | *** | *** |
| rate | * | *** | ** | * | |
| seqs | *** | *** | *** | *** | *** |
| topol | *** | *** | *** | ** | *** |
| gap | *** | *** | *** | *** | *** |
| length:rate | ** | ** | |||
| length:seqs | *** | *** | *** | * | *** |
| rate:seqs | *** | *** | |||
| length:topol | *** | *** | ** | ||
| rate:topol | *** | *** | *** | *** | ** |
| seqs:topol | *** | *** | *** | *** | ** |
| length:gap | *** | *** | *** | *** | ** |
| rate:gap | *** | ||||
| seqs:gap | *** | *** | *** | *** | *** |
| topol:gap | *** | *** | *** | *** | *** |
| length:rate:seqs | |||||
| length:rate:topol | *** | * | ** | ** | ** |
| length:rate:topol | *** | *** | *** | *** | |
| rate:seqs:topol | |||||
| length:rate:gap | |||||
| length:seqs:gap | *** | *** | *** | *** | *** |
| rate:seqs:gap | *** | ||||
| length:topol:gap | ** | *** | *** | *** | *** |
| rate:topol:gap | |||||
| seqs:topol:gap | *** | *** | *** | *** | |
| length:rate:seqs:topol | * | ||||
| length:rate:seqs:gap | * | ||||
| length:rate:topol:gap | |||||
| length:seqs:topol:gap | *** | * | *** | *** | |
| rate:seqs:topol:gap | |||||
| length:rate:seqs:topol:gap |
p ≤ 0.001***, p ≤ 0.01**, p ≤ 0.05*; parameters: length = alignment length; rate = evolutionary rate; seqs = number of sequences in the alignment; topol = tree topology of true tree; gap = gap pattern applied to full alignment. SIAa refers to the full SIA trees, while SIAb refers to the pruned SIA trees.