Table 2. Error rates for supervised classification.
French error | CTB error | Global error | ||
---|---|---|---|---|
(a) Classification based on all genes | ||||
GPLS | 17 | 7 | 12 | |
PAM | 25 | 29 | 27 | |
RF | 33 | 14 | 23 | |
LKSVM | 25 | 7 | 15 | |
(b) Classification based on H2O2 vs γ-radiation signature | ||||
GPLS | 8 | 21 | 15 | |
PAM | 25 | 29 | 27 | |
RF | 42 | 7 | 23 | |
LKSVM | 25 | 7 | 15 | |
French error | CTB error | Global error | P | |
(c) Classification based on homologous radiation signature | ||||
GPLS | 17 | 21 | 19 | 0.0038 |
PAM | 25 | 21 | 23 | <0.001 |
RF | 42 | 21 | 31 | 0.063 |
LKSVM | 8 | 21 | 15 | 0.0038 |
CTB=Chernobyl Tissue Bank; GPLS=generalised partial least-square; LKSVM=linear kernel support vector machines; PAM=prediction analysis of microarray; RF=random forest.
Classification and validation procedures are described in Materials and Methods.