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. 2006 Sep 19;95(7):906–913. doi: 10.1038/sj.bjc.6603361

Table 1. Primer sequences for the PCR of the 21 exons of the TOP1 gene.

SNP Localisationa Primer sequence Exon length (bp) Amplicon length (bp)
5′ UTR G4709344T rs6072250 S: GATACCAGCTCTGCCCAAGA As: AGACTCCAGAAACGGCTGAG 656
Exon 1   S: CCGACGTGTTGTTTAAAAG As: CCTAGCGAGCCGATCTAC 279 474
Exon 2   S: GGCCGCGAAGTTACAGTT As: ACGCCATGTCTGTCCTCT 25 285
Exon 3   S: TGTCAAGGTAGGCATACAGA As: GCTGAATGATGAGGGACTT 97 201
Exon 4   S: GGCTAACGCTTTGTGACTTA As: CCTTCCTCCCCTACTAGAAA 124 184
Exon 5   S: CCAGGAACTGATGCTACATA As: TTGGGTTAACTCAGACAACA 56 233
Exon 6   S: CACTCTGACCAGCAATTTTT As: AGTTCAGAGAAATCAGTCCA 96 280
Exon 7   S: TGTATTCATGTTCCCCTTTC As: AGCCCCAAAGGACCTAAG 76 130
Exon 8   S: GCTTTCTCACCATGTTTCTT As: ATTTTAACCCAGTGCTGAGA 107 158
Exon 9 G4774052A (Gly214Ser) rs6029542 S: ATCACTAAATGAGGCTGTGC As: TCTATTACATAGGATCCTTCCTT 116 242
Exon 10   S: TCACTTTTTGGAACCACTTT As: ACTTGATTGTTTTGCAAGGT 122 201
Exon 11   S: TCCCCATTTTCTTTTGACTA As: ATTCCAGAATTCTCCAGAGG 123 184
Exon 12 G4781682A (Arg349Arg) rs6029545 S: TCAGACTTTCCTCTACCTTGA As: CTTTTTGGCCCATAGGAT 188 325
Exon 13 Gly418Lys S: TTTCACTATCCTCGTGCTCT As: AGGTTATCAGCACCATGAAC 145 223
Exon 14   S: TGCCTGGCTATATTCAAAGT As: GATGGGAAGATGCTCTCAC 144 238
Exon 15 G4795621A (Glu517Lys) rs6129757 S: ATGTCTCTTCCATTCATGCT As: ACCCATGCTTGTTGAATAAT 186 288
Exon 16   S: TGCAAGTTTCTTTAAGTTTGG As: TTCAACATTGTGTGCTTCAT 69 181
Exon 17 G4797898A (Thr591Thr) rs1061982 S: TTCCTCTTTCCCTAACTTCC As: ATCTGGCCAAGCAATACTTA 115 276
Exon 18   S: GATAAGAGCCAGCAAAATCA As: TCCTCTCATTCGCAGATAAT 128 300
Exon 19 T4803328C (Lys676Lys) S: CATCTTGGTTTCACCTTCTC As: GCTGCACACTTTTCTCTACC 95 222
Exon 20 A4803680G (Asn722Ser) S: GGTTCTTGAGGACTTTGCTA As: AAGGAGGGCTCAACACTTAC 150 199
Exon 21 G4804749A (splice site) rs6072277 S: CATTGCTGAGTCACCCTAAT As: AGTGAGGCTCAGTTTATCCA 107 224
  G4804829C (Met758Ile) rs12057885      
a

This refers to mutations or SNPs mentioned in databases and that have been especially sought.