Table 1. Primer sequences for the PCR of the 21 exons of the TOP1 gene.
SNP | Localisationa | Primer sequence | Exon length (bp) | Amplicon length (bp) |
---|---|---|---|---|
5′ UTR | G4709344T rs6072250 | S: GATACCAGCTCTGCCCAAGA As: AGACTCCAGAAACGGCTGAG | — | 656 |
Exon 1 | S: CCGACGTGTTGTTTAAAAG As: CCTAGCGAGCCGATCTAC | 279 | 474 | |
Exon 2 | S: GGCCGCGAAGTTACAGTT As: ACGCCATGTCTGTCCTCT | 25 | 285 | |
Exon 3 | S: TGTCAAGGTAGGCATACAGA As: GCTGAATGATGAGGGACTT | 97 | 201 | |
Exon 4 | S: GGCTAACGCTTTGTGACTTA As: CCTTCCTCCCCTACTAGAAA | 124 | 184 | |
Exon 5 | S: CCAGGAACTGATGCTACATA As: TTGGGTTAACTCAGACAACA | 56 | 233 | |
Exon 6 | S: CACTCTGACCAGCAATTTTT As: AGTTCAGAGAAATCAGTCCA | 96 | 280 | |
Exon 7 | S: TGTATTCATGTTCCCCTTTC As: AGCCCCAAAGGACCTAAG | 76 | 130 | |
Exon 8 | S: GCTTTCTCACCATGTTTCTT As: ATTTTAACCCAGTGCTGAGA | 107 | 158 | |
Exon 9 | G4774052A (Gly214Ser) rs6029542 | S: ATCACTAAATGAGGCTGTGC As: TCTATTACATAGGATCCTTCCTT | 116 | 242 |
Exon 10 | S: TCACTTTTTGGAACCACTTT As: ACTTGATTGTTTTGCAAGGT | 122 | 201 | |
Exon 11 | S: TCCCCATTTTCTTTTGACTA As: ATTCCAGAATTCTCCAGAGG | 123 | 184 | |
Exon 12 | G4781682A (Arg349Arg) rs6029545 | S: TCAGACTTTCCTCTACCTTGA As: CTTTTTGGCCCATAGGAT | 188 | 325 |
Exon 13 | Gly418Lys | S: TTTCACTATCCTCGTGCTCT As: AGGTTATCAGCACCATGAAC | 145 | 223 |
Exon 14 | S: TGCCTGGCTATATTCAAAGT As: GATGGGAAGATGCTCTCAC | 144 | 238 | |
Exon 15 | G4795621A (Glu517Lys) rs6129757 | S: ATGTCTCTTCCATTCATGCT As: ACCCATGCTTGTTGAATAAT | 186 | 288 |
Exon 16 | S: TGCAAGTTTCTTTAAGTTTGG As: TTCAACATTGTGTGCTTCAT | 69 | 181 | |
Exon 17 | G4797898A (Thr591Thr) rs1061982 | S: TTCCTCTTTCCCTAACTTCC As: ATCTGGCCAAGCAATACTTA | 115 | 276 |
Exon 18 | S: GATAAGAGCCAGCAAAATCA As: TCCTCTCATTCGCAGATAAT | 128 | 300 | |
Exon 19 | T4803328C (Lys676Lys) | S: CATCTTGGTTTCACCTTCTC As: GCTGCACACTTTTCTCTACC | 95 | 222 |
Exon 20 | A4803680G (Asn722Ser) | S: GGTTCTTGAGGACTTTGCTA As: AAGGAGGGCTCAACACTTAC | 150 | 199 |
Exon 21 | G4804749A (splice site) rs6072277 | S: CATTGCTGAGTCACCCTAAT As: AGTGAGGCTCAGTTTATCCA | 107 | 224 |
G4804829C (Met758Ile) rs12057885 |
This refers to mutations or SNPs mentioned in databases and that have been especially sought.