Table 1. Details of SNPs used in the analyses.
Gene | Label | db SNPa | MAFb | Location | Codon number | Amino acidc |
---|---|---|---|---|---|---|
CAT | CAT-01 | rs1001179 | 0.22 | Regulatory | 0 | |
CAT | CAT-03 | rs769217 | 0.22 | Silent | 389 | D>D |
CAT | CAT-04 | rs511895 | 0.42 | Intronic | 0 | |
CAT | CAT-05 | rs7104301 | 0.26 | Regulatory | 0 | |
CAT | CAT-08 | rs1049982 | 0.32 | 5′UTRd | 0 | |
GPX1 | GPx1-01 | rs3448 | 0.25 | Intergenic | ||
GPX4 | GPx4-02 | rs713041 | 0.46 | 3′UTR | 0 | |
GPX4 | GPx4-04 | rs4807542 | 0.16 | Silent | 12 | P>P |
GPX4 | GPX4-06 | rs757229 | 0.46 | Intergenic | 0 | |
GSR | GSR-01 | rs1002149 | 0.16 | Regulatory | 0 | |
GSR | GSR-07 | rs4628224 | 0.19 | Intronic | 0 | |
GSR | GSR-12 | rs8190924 | 0.05 | Intronic | 0 | |
GSR | GSR-14 | rs2978663 | 0.37 | Intronic | 0 | |
GSR | GSR-16 | rs8191009 | 0.20 | Intronic | 0 | |
GSR | GSR-18 | rs3926402 | 0.39 | Intronic | 0 | |
GSR | GSR-19 | rs2911678 | 0.22 | Intronic | 0 | |
SOD1 | SOD1-01 | rs4998557 | 0.12 | Intronic | 0 | |
SOD1 | SOD1-02 | rs202445 | 0.17 | Regulatory | 0 | |
SOD1 | SOD1-03 | rs2070424 | 0.07 | Intronic | ||
SOD2 | SOD2-02 | rs1799725 | 0.49 | Missense | 16 | V>A |
SOD2 | SOD2-05 | rs2842958 | 0.21 | Intronic | 0 | |
TXN | TRX1-02 | rs1410051 | 0.24 | Intronic | 0 | |
TXN | TRX1-03 | rs4135168 | 0.26 | Intronic | 0 | |
TXN | TRX1-05 | rs4135192 | 0.33 | Intronic | 0 | |
TXN | TRX1-06 | rs2418076 | 0.27 | Intronic | 0 | |
TXN | TRX1-07 | rs4135208 | 0.33 | Intronic | 0 | |
TXN | TRX1-08 | rs4135211 | 0.07 | Intronic | 0 | |
TXN | TRX1-09 | rs4135225 | 0.33 | Intronic | 0 | |
TXN | TRX1-10 | rs2776 | 0.50 | 3′UTR | 0 | |
TXN | TRX1-11 | rs2301241 | 0.41 | 5′UTR | 0 | |
TXN | TRX1-12 | rs4135165 | 0.09 | Intronic | 0 | |
TXN | TRX1-13 | rs4135172 | 0.08 | Intronic | 0 | |
TXN | TRX1-14 | rs4135179 | 0.23 | Intronic | 0 | |
TXN | TRX1-15 | rs4135215 | 0.16 | Intronic | 0 | |
TXN | TRX1-16 | rs4135221 | 0.13 | Intronic | 0 | |
TXN2 | TRX2-01 | rs2281082 | 0.19 | Intronic | 0 | |
TXN2 | TRX2-03 | rs8139906 | 0.18 | Intronic | 0 | |
TXN2 | TRX2-04 | rs8140110 | 0.09 | Intronic | 0 | |
TXNRD1 | TRXR1-01 | rs4964778 | 0.18 | Intronic | 0 | |
TXNRD1 | TRXR1-02 | rs4964779 | 0.12 | Intronic | 0 | |
TXNRD1 | TRXR1-03 | rs4564401 | 0.07 | Intronic | 0 | |
TXNRD1 | TRXR1-04 | rs10861201 | 0.23 | Intronic | 0 | |
TXNRD2 | TRXR2-01 | rs2073752 | 0.28 | Missense | 370 | T>I |
TXNRD2 | TRXR2-03 | rs5748469 | 0.33 | Missense | 66 | S>A |
TXNRD2 | TRXR2-04 | rs756661 | 0.47 | Intronic | 0 | |
TXNRD2 | TRXR2-05 | rs2020917 | 0.28 | Intronic | 0 | |
TXNRD2 | TRXR2-07 | rs740603 | 0.46 | Intergenic | 0 | |
TXNRD2 | TRXR2-08 | rs4485648 | 0.20 | Intronic | 0 | |
TXNRD2 | TRXR2-09 | rs732262 | 0.09 | Intronic | 0 | |
TXNRD2 | TRXR2-10 | rs1548357 | 0.27 | Intronic | 0 | |
TXNRD2 | TRXR2-11 | rs2073750 | 0.21 | Intronic | 0 | |
TXNRD2 | TRXR2-12 | rs3788306 | 0.30 | Intronic | 0 |
db: rs number for each SNP which uniquely identifies it.
MAF: minor allele frequency.
Labels for amino acids: aspartic acid (D); proline (P); valine (V); alanine (A); threonine (T); isoleucine (I); serine (S).
UTR: untranslated region.