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. 2006 Sep 12;95(8):1092–1100. doi: 10.1038/sj.bjc.6603346

Table 2. Genes upregulated and associated with group I (benign cluster) and group II (Malignant cluster) as determined by hierarchical clustering.

Accession no. Symbol Genes upregulated in benign tumours
AI870821 SOX10 SRY (sex determining region Y)-box 10
AA664101 ALDH1A1 Aldehyde dehydrogenase 1 family, member A1
AA477400 TPM2 Tropomyosin 2 (beta)
H99676 COL6A1 Collagen, type VI, alpha 1
R62603 COL6A3 Collagen, type VI, alpha 3
AA683077 MAPK1 Mitogen-activated protein kinase 1
H95960 SPARC Secreted protein, acidic, rich in cysteine (osteonectin)
AA490172 COL1A2 Collagen, type I, alpha 2
N62586 ERCC5 Excision repair cross-complementing rodent repair deficiency, complementation group 5
AA071473 MATN2 Matrilin 2
R61229 GATM Gycine amidinotransferase (L-arginine:glycine amidinotransferase)
AA465216 D8S2298E Reproduction 8
AA682423 MAOB Monoamine oxidase B
T68892 SFRP1 Secreted frizzled-related protein 1
T90767 CCNT1 Cyclin T1
AA490471 SPARCL1 SPARC-like 1 (mast9, hevin, SC-1)
AA778198 PBX3 Pre-B-cell leukemia transcription factor 3
N58145 LHFP Lipoma HMGIC fusion partner
W15267 LRP6 Low-density lipoprotein receptor-related protein 6
H08561 IGFBP5 Insulin-like growth factor binding protein 5
AA598794 CTGF Connective tissue growth factor
T62048 CIS Complement component 1, s
     
Accession no.   Genes upregulated in malignant tumours
R38201 OPCML Opioid-binding protein/cell adhesion molecule-like
H97778 CDH6 Cadherin 6, type 2, K-cadherin (fetal kidney)
AI924523 NAP1 Pronapsin A
AA419229 MGC29643 Hypothetical protein MGC299643
R93509 STK4 Serine/threonine kinase 4
AA434373 ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific)
H59916 CD24 CD24 antigen
H97778 CDH1 Cadherin 1, type 1, E-cadherin (epithelial)
AW050484 TSPAN1 Tetraspan 1
H13688 GALNT3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
AA022949 GFG18 Fibroblast growth factor 18
AA405767 PAX8 Paired box gene 8
AA911661 HOXB2 Homeo box B2
AA683520 SLP1 Secretory leukocyte protease inhibitor (antileukoprotease)
AA401441 BF B-factor, properdin
W72393 RAMP3 Receptor (calcitonin) activity modifying protein 3 (RAMP3)