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. 2006 May 9;94(12):1921–1926. doi: 10.1038/sj.bjc.6603160

Table 1. Selection of SNPs across RB1.

SNP ID Genomic location Nucleotide changea SNPs chosen initially for genotyping SNP reported by NIEHS with MAF>0.05 Tag SNP Tagging SNP(s) r p 2
rs1573601 Upstream c>a     rs1981434, rs4151540, rs3092904 (g/+/a haplotype) 0.93
rs1981434 Intron 1 c>g   rs1981434 1.0
rs2854345 Intron 2 a>g rs2854345 1.0
rs4151437 Intron 2 g>a     rs4151551 0.80
rs4151438 Intron 2 c>g   FAILb rs2854345 0.19
rs520342 Intron 3 c>t rs520342 1.0
rs4151450 Intron 3 g>c     rs399413 0.85
rs198619 Intron 7 t>a     rs399413 0.84
rs4151510 Intron 11 g>a     rs4151620 1.0
rs4151520 Intron 11 g>a     rs520342 0.96
rs399413 Intron 12 g>a rs399413 1.0
rs4151540 Intron 17 ->aa   rs4151540 1.0
rs198610 Intron 17 g>t   ?c ?  
rs4151551 Intron 17 g>t   rs4151551 1.0
rs2227311 Intron 17 t>c rs4151620 1.0
rs2854344 Intron 17 g>a   ?c ?  
rs9535032 Intron 17 a>g   ?c ?  
rs425834 Intron 17 a>g   rs425834 1.0
rs1951775 Intron 17 g>t     rs399413 0.85
rs198570 Intron 17 g>t     rs3092904 1.0
rs4151580 Intron 18 g>a   Not polymd rs4151580 1.0
rs4151584 Intron 18 t>c   FAILb rs2854345 0.28
rs198580 Intron 19 a>g   ?c ?  
rs198590 Intron 21 g>a     rs520342 1.0
rs4151611 Intron 24 g>a   rs4151611 1.0
rs4151618 Intron 24 t>c     rs4151611 1.0
rs4151620 Intron 24 c>g rs4151620 1.0
rs3092904 Intron 24 t>a rs3520342 0.98
rs4151636 Downstream c>g   rs4151636 1.0
a

The most common allele is given first.

b

The SNP was initially selected for genotyping but the assay could not be designed.

c

The contribution of the SNP to the tagging of other identified SNP could not be estimated.

d

The SNP was not polymorphic in the British population.