Table 3. RB1 haplotype analysis using the 15 SNPs genotyped in the study set.
|
Frequency
|
||||||
|---|---|---|---|---|---|---|
| Haplotypea | Controls | Cases | OR (95% CI) compared to most common | P-value | OR (95% CI) compared to all others | P-value |
| 000000000000000 | 0.38 | 0.37 | Ref | — | 0.94 (0.86–1.03) | 0.19 |
| 111110000100010 | 0.16 | 0.17 | 1.12 (0.98–1.27) | 0.09 | 1.09 (0.97–1.22) | 0.16 |
| 000000010000000 | 0.13 | 0.13 | 0.99 (0.86–1.13) | 0.86 | 0.94 (0.83–1.07) | 0.33 |
| 000000100000000 | 0.10 | 0.09 | 1.01 (0.86–1.18) | 0.92 | 0.97 (0.83–1.12) | 0.64 |
| 101110001100010 | 0.07 | 0.06 | 0.94 (0.78–1.12) | 0.47 | 0.90 (0.75–1.06) | 0.21 |
| Rareb | 0.07 | 0.08 | 1.16 (1.03–1.32) | 0.02 | 1.15 (1.02–1.28) | 0.02 |
SNPs used for haplotype analysis have same order as Table 2. For each SNP, 0 represents the commonest allele and 1 the rarest allele.
Rare haplotypes (⩽4%) were pooled.